Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O18
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0270 - 19598062-19598694,19598797-19599154,19599247-195994...    30   1.5  
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547...    28   6.2  
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155           28   8.2  

>05_04_0270 -
           19598062-19598694,19598797-19599154,19599247-19599491,
           19599869-19599877,19599909-19599977,19600043-19600552
          Length = 607

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +3

Query: 387 KTSLSNLLERF*MIDLSSSFNHSTIETHSIYS-VLYFLVEDIRIDGIQEKKKLFNIFCYN 563
           K +L+ +L+RF ++     F    +E+HS  S VL FL   IR +   +    F +F  N
Sbjct: 494 KVALAMILQRFALVVSRPMFMRQCMESHSNPSTVLKFL--PIRFETSMDLCVDFWVFAVN 551

Query: 564 LISHSICFLLLYLYV 608
           +++ +    +LY++V
Sbjct: 552 MVNAADVHRVLYIFV 566


>04_04_0822 +
           28352941-28353825,28353863-28354016,28354714-28354754,
           28355060-28355310,28355411-28355591,28356138-28356323,
           28356396-28356569,28356992-28357150,28357424-28357501,
           28357612-28357748,28357980-28358044,28358115-28358148,
           28358216-28358372,28359135-28359196,28360041-28360118,
           28360940-28361042
          Length = 914

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 462 ETHSIYSVLYFLVEDIRIDGIQEKKKLFNIFCYNLIS 572
           + H ++S+L F++ DI   G  + KKL N   + LIS
Sbjct: 502 DLHELWSLLEFMMPDIFATGDIDLKKLLNAEDHELIS 538


>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
          Length = 220

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 8   VVSIRVAVSIM-VEALRRLVVARTPAKLIQATTAVMLSL 121
           VV++ +A ++  V A+RR  +ARTPA L      ++  L
Sbjct: 59  VVTVAIAAAVYSVPAIRRFFLARTPASLAAFVLVIVAPL 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,616,344
Number of Sequences: 37544
Number of extensions: 218976
Number of successful extensions: 321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)