Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O18
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040359-1|AAH40359.1| 1004|Homo sapiens Hermansky-Pudlak syndro...    30   9.1  
BC022062-1|AAH22062.2|  858|Homo sapiens HPS3 protein protein.         30   9.1  
AY033141-1|AAK53457.1| 1004|Homo sapiens Hermansky-Pudlak syndro...    30   9.1  
AK056575-1|BAB71221.1|  804|Homo sapiens protein ( Homo sapiens ...    30   9.1  
AF375663-1|AAK84131.1| 1004|Homo sapiens Hermansky-Pudlak syndro...    30   9.1  

>BC040359-1|AAH40359.1| 1004|Homo sapiens Hermansky-Pudlak syndrome
           3 protein.
          Length = 1004

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 402 NLLERF*MIDLSSSFNHSTIETHSIYSVLYFLVEDIRIDG--IQEKKKLFNIFCYNLISH 575
           +LL R    D+SS      I+ HS+  +  +    +  DG  + ++K+L ++FC+  + H
Sbjct: 291 HLLYRRFAPDISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPH 350

Query: 576 SICFLLLYLYVFTMSLY 626
                ++   V  MS+Y
Sbjct: 351 VGYLYMVVKSVELMSVY 367


>BC022062-1|AAH22062.2|  858|Homo sapiens HPS3 protein protein.
          Length = 858

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 402 NLLERF*MIDLSSSFNHSTIETHSIYSVLYFLVEDIRIDG--IQEKKKLFNIFCYNLISH 575
           +LL R    D+SS      I+ HS+  +  +    +  DG  + ++K+L ++FC+  + H
Sbjct: 145 HLLYRRFAPDISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPH 204

Query: 576 SICFLLLYLYVFTMSLY 626
                ++   V  MS+Y
Sbjct: 205 VGYLYMVVKSVELMSVY 221


>AY033141-1|AAK53457.1| 1004|Homo sapiens Hermansky-Pudlak syndrome
           type-3 protein protein.
          Length = 1004

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 402 NLLERF*MIDLSSSFNHSTIETHSIYSVLYFLVEDIRIDG--IQEKKKLFNIFCYNLISH 575
           +LL R    D+SS      I+ HS+  +  +    +  DG  + ++K+L ++FC+  + H
Sbjct: 291 HLLYRRFAPDISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPH 350

Query: 576 SICFLLLYLYVFTMSLY 626
                ++   V  MS+Y
Sbjct: 351 VGYLYMVVKSVELMSVY 367


>AK056575-1|BAB71221.1|  804|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32013 fis, clone NTONG1000033. ).
          Length = 804

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 402 NLLERF*MIDLSSSFNHSTIETHSIYSVLYFLVEDIRIDG--IQEKKKLFNIFCYNLISH 575
           +LL R    D+SS      I+ HS+  +  +    +  DG  + ++K+L ++FC+  + H
Sbjct: 91  HLLYRRFAPDISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPH 150

Query: 576 SICFLLLYLYVFTMSLY 626
                ++   V  MS+Y
Sbjct: 151 VGYLYMVVKSVELMSVY 167


>AF375663-1|AAK84131.1| 1004|Homo sapiens Hermansky-Pudlak
           syndrome-3 protein protein.
          Length = 1004

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 402 NLLERF*MIDLSSSFNHSTIETHSIYSVLYFLVEDIRIDG--IQEKKKLFNIFCYNLISH 575
           +LL R    D+SS      I+ HS+  +  +    +  DG  + ++K+L ++FC+  + H
Sbjct: 291 HLLYRRFAPDISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPH 350

Query: 576 SICFLLLYLYVFTMSLY 626
                ++   V  MS+Y
Sbjct: 351 VGYLYMVVKSVELMSVY 367


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,202,462
Number of Sequences: 237096
Number of extensions: 1384105
Number of successful extensions: 5375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5375
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)