Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O17
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.7  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   4.9  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.5  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   6.5  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = +2

Query: 272  EFLSLFFENC-TSIPKALALLSDC*QS*HRWRTEEFACLLQLHESFPVNILC*SSNSTYW 448
            E L LF  N   S P A  L S    S H  +     CL ++H   P  +LC S +  + 
Sbjct: 3956 EPLWLFINNIHLSTPWAEKLPSK--MSNHLHKNSRIVCLSEIHNQLPHQLLCISRSIVFN 4013

Query: 449  VDPSNQKTFCRYSPSLPLQT 508
               S +         LP  T
Sbjct: 4014 KQTSFKNNLLNLLELLPTMT 4033


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 253 TTEFSQNGFPSFWIKHRLINSRKIKILHTRHQD 155
           TT F QN FP   ++H  INS K  +L  R  D
Sbjct: 160 TTTF-QNMFPPISVQHTNINSVKRVLLLNRRDD 191


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 465 KKHSAVTVHRFRCRLIWTFP*KFSDIIRIKFRVFYVMCGFLIR*FAL 605
           KK   +  HR R  L        SDI   + ++F+  CG +IR F L
Sbjct: 576 KKSKPIEQHRNREELTVLVTNLPSDISENELKIFFKDCGNIIRIFIL 622


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 428 SSNSTYWVDPSNQKTFCR 481
           +S+ +Y V PSN  TFCR
Sbjct: 204 NSSFSYEVQPSNYTTFCR 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,142
Number of Sequences: 5004
Number of extensions: 55125
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)