Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O17
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792...    29   2.2  
11_01_0699 - 5757410-5757458,5757760-5757831,5758084-5758152,575...    27   8.7  

>06_03_0590 + 22574985-22578018,22578125-22578469,22579171-22579217,
            22579450-22579573,22579622-22579686
          Length = 1204

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 300  ARQYPKLLLSSQIVDNLNTAGELKSLLVYCNC-MKVFR*IFCVRVPTPHTGW 452
            AR +PK   +S+IVD     GE+K   V  NC + + R   C  V +P+  W
Sbjct: 1057 ARAFPKN--TSEIVDPTMLQGEIKVTTVMQNCIIPLVRIGLCCSVASPNDRW 1106


>11_01_0699 -
           5757410-5757458,5757760-5757831,5758084-5758152,
           5758329-5758477,5758568-5758699,5758784-5759109,
           5759330-5759399,5759684-5759738,5760322-5760377,
           5760500-5760700,5761466-5761651,5761756-5761906,
           5761978-5762206,5762321-5762582,5762858-5762959
          Length = 702

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 464 GLMDPPSMWSWNSNTE 417
           GL+DP  MW WN   E
Sbjct: 497 GLLDPIKMWDWNKGWE 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,997
Number of Sequences: 37544
Number of extensions: 306679
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)