Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O17
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical...    28   5.9  
Z81544-1|CAB04436.1|  129|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatos...    27   7.9  
U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatos...    27   7.9  
U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatos...    27   7.9  
AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
            protein Y75B8A.24 protein.
          Length = 2121

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 301  HVNTQSSCSPLRLLTILTPLAN*RVCLSIATA*KFSGEYSVLEFQLHI 444
            HV T + CSP+  L++LTP       +S+  A +    YS  E  L+I
Sbjct: 1620 HVLTWARCSPVMALSLLTPRIYPMHPISMQYAVRVLRSYSADELLLYI 1667


>Z81544-1|CAB04436.1|  129|Caenorhabditis elegans Hypothetical
           protein F49C5.5 protein.
          Length = 129

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -2

Query: 170 HKTSG*IELRSCHLCIN---IFKFTVFGLFYYFVQIKPIC 60
           H  SG  +L  CHLCI     F F +     +F+   P C
Sbjct: 30  HTHSGRADLDRCHLCIRDDLPFLFDISPFRIWFISYPPFC 69


>U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform c protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 440 WSWNSNTEYSPENFHAVAIDKQTLQFAS 357
           WS   N ++    FH   +DK T+ F S
Sbjct: 252 WSEIKNIQFKNRKFHMKTVDKSTISFRS 279


>U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform b protein.
          Length = 709

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 440 WSWNSNTEYSPENFHAVAIDKQTLQFAS 357
           WS   N ++    FH   +DK T+ F S
Sbjct: 252 WSEIKNIQFKNRKFHMKTVDKSTISFRS 279


>U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform a protein.
          Length = 654

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 440 WSWNSNTEYSPENFHAVAIDKQTLQFAS 357
           WS   N ++    FH   +DK T+ F S
Sbjct: 252 WSEIKNIQFKNRKFHMKTVDKSTISFRS 279


>AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.2 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 479 GRMFFGLMDPPSMWSWNSNTEYSPENFHAVAIDKQTLQFASGVKIVNNLRGEQELWVLTC 300
           G  FF +  PPS++ +     Y+P    ++     T +  S V +   + GEQ+ W++  
Sbjct: 211 GPAFFTMRAPPSLYDYKIGI-YNP----SIEECTSTHEIRSMVIVGYGIEGEQKYWIVKG 265

Query: 299 SF 294
           SF
Sbjct: 266 SF 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,989,099
Number of Sequences: 27780
Number of extensions: 298879
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)