Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O14
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    29   0.44 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   4.1  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   4.1  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.2  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.5  

>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 159 FLTSNLHFTLESTVNGHCNINVHPN-FRTC*SEPSSPASSRKANLF 25
           F T NL     S    +  +N+H N       +PSSPAS+  AN F
Sbjct: 375 FTTPNLSRRNSSDFGPNSPVNIHSNPVPISGQQPSSPASNSNANFF 420


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 205 CAHIKSRDKPYTLVFFFNFKFTLYTRV 125
           C H KS ++P    +FF+  FT   R+
Sbjct: 275 CLHAKSEEEPLEFSYFFHKYFTFPLRL 301


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 388 IYILSVEFVMEKAYIRNNNKDWGWFRSSVI 299
           + +L++EF++  AY+   +KD  W + S +
Sbjct: 346 VCVLTMEFLLHYAYVTAISKDGNWNQYSAV 375


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 69  SEPSSPASSRKANLFDATK 13
           S  SSPASS++ +LF  TK
Sbjct: 170 SSVSSPASSKQKSLFQCTK 188


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 186 VISLIHLFFFLTSNLHFTLESTVN 115
           +  L H   FLT+N  +T+ ST++
Sbjct: 144 LFGLFHHLMFLTTNYSYTINSTLD 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,299
Number of Sequences: 5004
Number of extensions: 41302
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)