Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O14
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    29   2.4  
10_07_0145 - 13381172-13381334,13381468-13381665,13381753-133819...    28   5.5  
07_03_1711 + 28909297-28909329,28909725-28910204,28910300-289104...    27   9.6  

>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 394 IYIYILSVEFVMEKAYIRNNN-KDWGWFRSSVIIRDLSNKRCD 269
           IY +I   EF++EK  I+ N    WG+    +++    N R D
Sbjct: 549 IYDFISCGEFLLEKGIIKENKLAGWGYSAGGLLVASAINTRPD 591


>10_07_0145 -
           13381172-13381334,13381468-13381665,13381753-13381952,
           13382036-13382149,13382255-13382391,13382501-13382611,
           13383793-13384060,13385034-13385132,13385277-13385471
          Length = 494

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 424 DFVLKPDKVYIYIYILSVEFVM 359
           DFVL   K YIYIY+ +V F +
Sbjct: 460 DFVLGNHKYYIYIYLQAVAFTV 481


>07_03_1711 +
           28909297-28909329,28909725-28910204,28910300-28910428,
           28910511-28910567,28910669-28910761,28911278-28911483,
           28912757-28912898,28912981-28913170,28913263-28913369
          Length = 478

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 23  SNKFAFLEDAGDDGSD*HVLKF 88
           +NK+A + DAG  GS  HV +F
Sbjct: 132 ANKYAVIFDAGSSGSRVHVFRF 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,553,756
Number of Sequences: 37544
Number of extensions: 216234
Number of successful extensions: 330
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)