Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O14
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-8|CAJ76940.1|  371|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z99171-8|CAB16315.1|  368|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Y12500-1|CAA73102.1|  368|Caenorhabditis elegans adenosylmethion...    27   8.6  
Y12499-1|CAA73101.1|  368|Caenorhabditis elegans adenosylmethion...    27   8.6  
AL023853-3|CAA19560.1|  368|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z29095-8|CAJ76940.1|  371|Caenorhabditis elegans Hypothetical
           protein R10E11.6a protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 379 LSVEFVMEKAYIRNNNKDWGWFRSSVIIRDL---SNKRCDSHCTSIIN*VHYYIAQC*DR 209
           LSV+   E  Y RN  + W  F  +   +++    +++C   C  + N + Y   QC D 
Sbjct: 293 LSVQSTKEAEYCRNLRRKWETFMDTTPEQNVEMTDDRKCAICCQPVQNPIDYG-GQCFDV 351

Query: 208 LCAHI 194
            CA++
Sbjct: 352 TCANL 356


>Z99171-8|CAB16315.1|  368|Caenorhabditis elegans Hypothetical
           protein F47G4.7 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 487 KNLHQSVLYITVTNTSPSLYCDFVLKPDKVYIYIYILSVEFVMEK 353
           KN    V Y+         YC   LK D+ Y+Y +   VEF   K
Sbjct: 143 KNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYTFHREVEFPAHK 187


>Y12500-1|CAA73102.1|  368|Caenorhabditis elegans adenosylmethionine
           decarboxylase protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 487 KNLHQSVLYITVTNTSPSLYCDFVLKPDKVYIYIYILSVEFVMEK 353
           KN    V Y+         YC   LK D+ Y+Y +   VEF   K
Sbjct: 143 KNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYTFHREVEFPAHK 187


>Y12499-1|CAA73101.1|  368|Caenorhabditis elegans adenosylmethionine
           decarboxylase protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 487 KNLHQSVLYITVTNTSPSLYCDFVLKPDKVYIYIYILSVEFVMEK 353
           KN    V Y+         YC   LK D+ Y+Y +   VEF   K
Sbjct: 143 KNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYTFHREVEFPAHK 187


>AL023853-3|CAA19560.1|  368|Caenorhabditis elegans Hypothetical
           protein F47G4.7 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 487 KNLHQSVLYITVTNTSPSLYCDFVLKPDKVYIYIYILSVEFVMEK 353
           KN    V Y+         YC   LK D+ Y+Y +   VEF   K
Sbjct: 143 KNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYTFHREVEFPAHK 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,645,115
Number of Sequences: 27780
Number of extensions: 224382
Number of successful extensions: 387
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)