Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O13
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    28   1.2  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   1.6  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    27   1.6  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    25   6.3  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.3  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = -3

Query: 514 LQLQNSDIVFAVNVIWMWYDFSHFYKNNRISAHILHTISLLGCIIFAKSSYQACKFSFLH 335
           L +  + +++ + +  + Y  S   KN+  +  +  T+ +   ++F K  +  CKFS LH
Sbjct: 164 LLVYGTGVIYVLTIALINYLISKSLKNSIFNPLLTWTLDI--SVVFFKEYFAYCKFSSLH 221


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 442  YKNNRISAHILH-TISLLGCIIFAKSSYQACKFSFLHTMSCR 320
            Y  + I+  +LH  +S +GC+ F  + YQ+    F+H    R
Sbjct: 1112 YDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVR 1153


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -3

Query: 442 YKNNRISAHILHTISLLGCIIFAKSSYQACKFSFLHTMSCRDDMLRANQRRPASDFSFA 266
           Y++     +IL     LGC+I    +Y    FS  +    RD+     +  P++   FA
Sbjct: 433 YRSKNAPKYILGNAFTLGCVIVGGLAYVVMFFSLRYVNKKRDERCARGEFDPSAIGDFA 491


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 301 NQRRPASDFSFAPTSVVFKKD*P--GIVVNK 215
           N  RPAS  SF+P+S+  K   P  G+ VNK
Sbjct: 66  NHFRPASSLSFSPSSLSRKDSGPGDGLEVNK 96


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 574 NESA*WKANRSNEIGVWSIVLQLQNSDIV 488
           NE   WKAN SNE     I    +++DI+
Sbjct: 107 NEIVDWKANNSNEKAQNKIATNKESTDIL 135


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 31  YAENLEDNRFLPVGNSFSGRRNSL-HEILYFIIHATAG 141
           YAE++  NR+L   N+ SGRRN   + +  F + A +G
Sbjct: 34  YAEHVPLNRYLTQWNN-SGRRNGFSNNVELFNLEARSG 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,466
Number of Sequences: 5004
Number of extensions: 48470
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)