Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_O13
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0127 + 22957203-22957420,22957552-22957675,22957784-22958002 32 0.40
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 29 2.1
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 29 2.1
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 2.8
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 4.9
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 28 4.9
12_01_0918 + 9072774-9072863,9073385-9073539,9073834-9074213,907... 28 6.5
02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323... 28 6.5
12_01_0417 - 3296066-3296356,3296491-3296541,3296657-3296862,329... 27 8.5
01_06_1047 + 34092702-34094249 27 8.5
>04_04_0127 + 22957203-22957420,22957552-22957675,22957784-22958002
Length = 186
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -1
Query: 453 SATFIRTTGSAHTSCTQSVSLDVSYSPSRATKLVNLAFFTQ*AAVMTCFELISVAPHLIS 274
SA + TT TQ + + YS L + FF AV+ + ++S+ ++
Sbjct: 42 SAIAMGTTNETLPFFTQFIQFEAKYSD-----LPSFTFFVAANAVVCTYLVLSIPLSIVH 96
Query: 273 VLRPRL*YSR 244
+LRPR YSR
Sbjct: 97 ILRPRARYSR 106
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 73 NSFSGRRNSLHEILYFIIHATAGYCFNIQHNCQHKRRRF 189
+SF G N HE+ F++ Y F++ H + K+ F
Sbjct: 687 SSFGGSFNFGHEVSNFVVSVFCRYLFHLSHPSKSKKHYF 725
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 73 NSFSGRRNSLHEILYFIIHATAGYCFNIQHNCQHKRRRF 189
+SF G N HE+ F++ Y F++ H + K+ F
Sbjct: 762 SSFGGSFNFGHEVSNFVVSVFCRYLFHLSHPSKSKKHYF 800
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 487 FAVNVIWMWYDFSHFYKNNRISAHILHTISLLGCIIFAK 371
F N W W F+ K + +S+ L +L CII++K
Sbjct: 1878 FLKNDWWYWSSFTAAMKTSTVSSLALRVYTLDDCIIYSK 1916
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = +2
Query: 365 ARLGEYDTSKETDCVQDVCADPVVLIKVAEIIPHPDYIDSENDIAVLKLEHDAPY 529
A + EY + + +C +++ V +P P + +E D V+ + +++PY
Sbjct: 23 AAVVEYTFNVGNLSISQLCQQEMIITAVNGQLPGPTIVATEGDTVVVHMVNESPY 77
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 28.3 bits (60), Expect = 4.9
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 257 RRGRKTEIRCGATLISSKHVITAAHCVKKAKFTSLVARLGEYDTSKETDCVQDVCADPVV 436
RR R+ CGA+ S+ TAA ++K +T+ VA TS T C +V P V
Sbjct: 495 RRRRRRTACCGASRRSATISYTAATRLRKGSWTTSVA------TSTSTACTINV---PRV 545
Query: 437 LIKVAE--IIPHPDYIDS 484
+ + I+PH D+ +S
Sbjct: 546 IDSNLDTAIVPHFDHCES 563
>12_01_0918 +
9072774-9072863,9073385-9073539,9073834-9074213,
9074299-9075273,9076001-9076134
Length = 577
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 407 VQDVCADPVVLIKVAEIIPHPDYIDSENDIAVLKLEHDAPYT 532
+ +C P+++ V +P P E D V+ L + +PY+
Sbjct: 36 ISQLCQPPLIITAVNGQLPGPTIYAREGDTVVVHLVNTSPYS 77
>02_01_0450 +
3234378-3234834,3235118-3235223,3235722-3235920,
3236119-3236187,3236299-3236373,3236484-3236582,
3236694-3236864,3237394-3237519
Length = 433
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 311 HVITAAHCVKKAKFTSLVARLGEYDTSKETDCVQDVCADPV 433
H+ H + K F SL R + S CV+DV +PV
Sbjct: 304 HLGDTPHSLTKGDFESLARRTDGFSGSDIAVCVKDVLFEPV 344
>12_01_0417 -
3296066-3296356,3296491-3296541,3296657-3296862,
3296944-3297237,3297335-3297533,3297620-3297679,
3297786-3297975,3298112-3298245,3298339-3298602,
3299158-3299344,3299476-3299540,3299622-3299776,
3300650-3300735,3301240-3301478
Length = 806
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -2
Query: 536 NRCMEH-RAPASEQRYRFRCQCNLD 465
N C++ RAP SE R RC N D
Sbjct: 743 NNCLDQMRAPTSETRIFMRCDVNFD 767
>01_06_1047 + 34092702-34094249
Length = 515
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 513 STMLHTPISLDRFAFHQADSLPKTTFV 593
S L+ P+SLD + + D LP TFV
Sbjct: 371 SMRLYPPVSLDTYVCKEEDFLPDGTFV 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,778,490
Number of Sequences: 37544
Number of extensions: 313024
Number of successful extensions: 731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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