Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O13
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    69   3e-14
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   6.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 69.3 bits (162), Expect = 3e-14
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
 Frame = +2

Query: 284 CGATLISSKHVITAAHCVKKAKFTSLVARLGEYDTSKETDCVQDVCADPVVLIKVAEIIP 463
           CGAT+IS ++V+TAAHC+     T L   +GE+D S +T+       +  VL  + ++I 
Sbjct: 188 CGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTE------TNATVLHSINKVII 241

Query: 464 HPDY--IDSE----NDIAVLKLEHDAPYTDFIRPICLP 559
           HP Y  I+ +    NDIA+LK E D  + D + P CLP
Sbjct: 242 HPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLP 279


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/76 (19%), Positives = 32/76 (42%)
 Frame = -3

Query: 532 GVWSIVLQLQNSDIVFAVNVIWMWYDFSHFYKNNRISAHILHTISLLGCIIFAKSSYQAC 353
           G +  +L+L+   +    N +W    F     ++ +    LHT+ ++   + A      C
Sbjct: 110 GAFQPLLELKKLTVQ-TFNSVWGASRFLELAPDSFLGLRELHTLEIVESNVQALPVNSLC 168

Query: 352 KFSFLHTMSCRDDMLR 305
               L T++  ++ LR
Sbjct: 169 SLDNLQTLNLTENRLR 184


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = -1

Query: 555 RQIGLMKSVYGASCSSFRTAISFSLSM*SGCGMISATFIRTTGSAHTSCTQSVSLDVSYS 376
           +Q  +  + +GA+ S       F  +  S   + +A  +    +   SC  + SL  + +
Sbjct: 103 QQQAVAAAAFGATSSMVP---GFGSTAASSAALAAAAAVDAATAGDKSCRYTASLAGNVA 159

Query: 375 PSRATKLVN 349
           P+ A  +VN
Sbjct: 160 PASADPMVN 168


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 440 IKVAEIIPHPDYIDSEN 490
           + + EI PH +Y DS++
Sbjct: 518 VMLGEISPHHEYYDSKS 534


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 440 IKVAEIIPHPDYIDSEN 490
           + + EI PH +Y DS++
Sbjct: 216 VMLGEISPHHEYYDSKS 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,897
Number of Sequences: 438
Number of extensions: 3307
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)