Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O10
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   1.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   3.6  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    26   3.6  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 221 QRPLHGR*WGISYYQIRWRRTEISKVKTQES 313
           Q P H + +G   Y + W  TEI ++  Q++
Sbjct: 297 QSPTHEKNYGHDEYSLPWNLTEIKRIDIQQA 327


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 449 CKTSLRVTNNSLRVFKIKRISVQEIVI 529
           C TSLRV +++LR+ ++   S ++IV+
Sbjct: 637 CPTSLRVYDSNLRLTQLFNFSKKQIVV 663


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 402 SRLIFVMTNVMFIPSIFHKY 343
           S L++ M  ++FIP +F+KY
Sbjct: 77  SALVYFMCMIIFIPVLFYKY 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,453
Number of Sequences: 5004
Number of extensions: 42749
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)