Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O10
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0248 + 10942363-10942612,10942702-10943345,10944301-109448...    32   0.30 
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    28   6.5  
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129...    27   8.6  
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138...    27   8.6  

>05_03_0248 +
           10942363-10942612,10942702-10943345,10944301-10944816,
           10945085-10945237,10945545-10945637
          Length = 551

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 156 TSDIEFPEPGQRSISYISAVYIKDHYTDGNGGYPIIKSGGVGQKF--LKLKLKSQRNHGF 329
           T D++  + G R +SY S  + KD  + G+GG+          K+  L L L+S    GF
Sbjct: 225 TYDLDAADLGSREVSYYSVTWEKDIGSGGDGGWVFHHKLRTAPKYPWLMLYLRSDATKGF 284

Query: 330 N 332
           +
Sbjct: 285 S 285


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 189 RSISYISAVYIKDHYTDGNGGYPIIKSGGVGQKFLKLKLKSQRNHGFNFTV 341
           RSI    A+ +   ++   G  P++ SGG+G+  L   +  + ++ F+ TV
Sbjct: 336 RSIGQYIAMSLNAEFSKKPGHAPVLPSGGIGKTTLAQYIYKEVHNYFDVTV 386


>12_01_0173 -
           1292164-1293036,1294063-1294098,1294195-1294334,
           1295592-1295748,1295862-1296035,1296146-1296396,
           1299446-1299590
          Length = 591

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 179 LREFYVTGPHDKREAVFVLVDFVDEEIAIG 90
           L++FYV G  D ++ V  L+D  DE    G
Sbjct: 114 LKDFYVNGGEDGKKVVGRLIDIWDERKVFG 143


>11_01_0172 -
           1383568-1384440,1385336-1385401,1385470-1385505,
           1385604-1385743,1386978-1387134,1387245-1387418,
           1387540-1387790,1390296-1390446
          Length = 615

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 179 LREFYVTGPHDKREAVFVLVDFVDEEIAIG 90
           L++FYV G  D ++ V  L+D  DE    G
Sbjct: 116 LKDFYVNGGEDGKKVVGRLIDIWDERKVFG 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,223
Number of Sequences: 37544
Number of extensions: 309412
Number of successful extensions: 955
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)