Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O10
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical p...    32   0.27 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    30   1.4  
Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U97404-2|AAB93309.1|  795|Caenorhabditis elegans Acid-sensing/am...    27   7.7  

>Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical
           protein Y69H2.9 protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 389 NISRDSR*LVKVLYFNNKINCKTSLRVTNNSLRVFKI 499
           N +RD + +   LYF    NC T L + +N+L+ +KI
Sbjct: 32  NPNRDRKFIDSQLYFLTSCNCSTQLALASNNLKSYKI 68


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 269 GFDNRISPITVRVMVFDVHGADVRDAPL-SWLREFYVTGPHDKREAVFVLVD-FVDEEIA 96
           G    + PI  +V++ D     +  + L SWLR  Y+T   D R A   L D F D  I 
Sbjct: 637 GIIEALGPILRKVIIDDRQIIGIAHSGLISWLRNRYLTSSQDIRSAHLQLSDLFADLLID 696

Query: 95  IGQLPQEQV 69
             Q P+ ++
Sbjct: 697 NEQSPRHEI 705


>Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical
           protein T03D8.6 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +3

Query: 135 GFPFIVRTSDIEFPEPGQRSISYISAVYIKDHYT-------DGNGGYPIIKS 269
           GF F    S+  F EPG+R +S +S + I DH T        G+GG  II +
Sbjct: 437 GFGFA--PSETNFIEPGKRPMSSMSPMVIFDHVTKKVRMVIGGSGGSKIISA 486


>U97404-2|AAB93309.1|  795|Caenorhabditis elegans
           Acid-sensing/amiloride-sensitiveion channel family
           protein 1 protein.
          Length = 795

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
 Frame = +3

Query: 30  LFCFLAAASCQSHDLFL--GQLSYGDLLV-YKVNEYKYGFPFIVRTSDIEFPEPGQRSI- 197
           L CFL   SC  H  +L   + +  D++V  ++   +  FP +   +   +     R + 
Sbjct: 61  LLCFLFCLSCFGHQAYLIVERFNRNDIIVGVEIKFEEIKFPAVTICNMNPYKNSAARELG 120

Query: 198 ---SYISAVYIKDHYTDGNGGYPIIKSGGVGQKFLKLKLKSQRNHGFNFTVSIYG 353
              + I A  +    +DGN  +   K      K + + L  +  HG  FT   YG
Sbjct: 121 AIRNAIEAFELAIDKSDGN-AHSKRKKRSANSKMVPIDLLCKEEHGM-FTAHDYG 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,621
Number of Sequences: 27780
Number of extensions: 253015
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)