Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O09
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   1.5  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   3.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.2  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   8.3  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   8.3  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 144 VSLKFVHTLRLESVSYGHSLMQLQIAS 64
           VS +F H LRL+ V+  H +   +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 196 LGAVPRGAVPPRADRVLRDLQG 261
           LG V RG +P   DR+L  LQG
Sbjct: 476 LGHVQRGGIPCAYDRMLATLQG 497


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 26   CSAGRVCEINEHGEAICNCIKEC 94
            C+A R+C++ E       C+ +C
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 27  AAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPG 149
           ++P+ +  STST   S+  S  + T+PT G    Q  +  G
Sbjct: 464 SSPSGTNSSTSTSSTSSKHSTGISTEPTTGEENKQDGSVGG 504


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 227 GGTAPRGTAPSGRGRGSAVGTPRSPMTRS 141
           GGT   G  PS    GSA+  P++   R+
Sbjct: 409 GGTGYTGVTPSHAANGSALAAPQATPFRT 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,398
Number of Sequences: 5004
Number of extensions: 42768
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)