Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O07
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   0.56 
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             25   2.3  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    24   3.0  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   5.3  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    23   7.0  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    23   9.2  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    23   9.2  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.6 bits (56), Expect = 0.56
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 69  PSYEGSMYRHILHPSKRDY 13
           PSY GS  R   HPS++ Y
Sbjct: 420 PSYNGSKVRSTSHPSRQQY 438


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -1

Query: 201 LVMWVK-PMGIYRRNQFARGSCRSASI--ER*FTLDI-ALVKRHHQ 76
           L  W K P+G +R+NQ+ +   R   +  +  FTL I    KR H+
Sbjct: 502 LSRWEKIPIGTFRKNQYIKSMARRDELIRDEWFTLAIKTREKRRHK 547


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 87  ASPTLCPT*INALWTRFDMIHGQTDYVD 170
           AS T  PT  N   T F  +H Q  YVD
Sbjct: 271 ASLTNIPTISNVNATNFHPLHSQQPYVD 298


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 61  IARCILVVPLHQRYVQRESTLYGRAST*STGKLITSIYAHRLNPH 195
           IAR  ++  L    +Q    L  +A     G  + SIY + + P+
Sbjct: 10  IARAFIITFLFSLILQDNGVLARKAKKQDKGAALKSIYDYHVRPY 54


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 148 WIMSKRVHRALIHVGHSVGEA 86
           W M   +  + I+VGHS+ +A
Sbjct: 393 WTMQPNIRFSNIYVGHSIEDA 413


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 151 PWIMSKRVHRALIHVGHSVGE 89
           PW ++K + +AL H G+ + E
Sbjct: 479 PWSITKYLPQALQHSGYLIAE 499


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 76  LVVPLHQRYVQRESTLYGR 132
           +VVP+H+ +V    T YGR
Sbjct: 562 VVVPVHETFVPIGLTSYGR 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,947
Number of Sequences: 5004
Number of extensions: 19847
Number of successful extensions: 31
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)