Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O07
         (264 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0409 - 3096372-3097052,3097324-3098652                           27   1.6  
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589...    25   6.3  
04_01_0625 - 8222105-8222462,8222574-8222926,8223029-8223204,822...    25   6.3  
02_02_0701 - 13067547-13067580,13067725-13067864,13068525-130686...    25   8.3  
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935...    25   8.3  

>11_01_0409 - 3096372-3097052,3097324-3098652
          Length = 669

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 61  IARCILVVPLHQRYVQRESTLYGRAS 138
           ++RC++ VPLH R V+ E+ LY   S
Sbjct: 599 LSRCVVAVPLHHR-VEIEAKLYVETS 623


>06_03_1227 +
           28557855-28558323,28558426-28558586,28558850-28558929,
           28559015-28559150,28559239-28559388,28559717-28559899
          Length = 392

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 172 IST*SVCPWIMSKRVHRALIHVGHSVGEAAPPVYT 68
           IS   +  W+ S+  HRA+  +  + G  AP  YT
Sbjct: 211 ISDFGLAKWLPSEWTHRAIAPIEGTFGCLAPEYYT 245


>04_01_0625 -
           8222105-8222462,8222574-8222926,8223029-8223204,
           8223318-8223555,8226983-8227423
          Length = 521

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 117 NALWTRFDMIHGQTDYVDICP 179
           N  W     +HG  DY+D+ P
Sbjct: 498 NGFWADLFDVHGPVDYIDLHP 518


>02_02_0701 -
           13067547-13067580,13067725-13067864,13068525-13068659,
           13068761-13068808,13068834-13068859,13068990-13069057,
           13069101-13069112,13070359-13070415,13070817-13070935,
           13071700-13071810,13076755-13077066
          Length = 353

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -1

Query: 210 CHLLVMWVKPMGIY----RRNQFARGSCRSASIER*FTLDIALVKRHHQYTPSYE 58
           C   +MW+K +G+Y        + R  C++  IE     ++ L  R + + PS+E
Sbjct: 113 CPSNIMWLKKLGVYDVVTLSESYERLVCQAHGIE-----NLVLPTRGYLHAPSFE 162


>01_06_1514 -
           37892552-37893074,37893291-37893367,37893471-37893587,
           37893826-37893926,37895077-37895146,37895318-37895415,
           37896326-37896419,37896792-37896882,37897222-37897547,
           37898193-37898278,37899078-37899417
          Length = 640

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 88  LHQ-RYVQRESTLYGRAST*STGKLI 162
           +HQ R+V   S++ GRAST   GK +
Sbjct: 137 MHQNRFVSEVSSILGRASTVGLGKAV 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,870,058
Number of Sequences: 37544
Number of extensions: 141704
Number of successful extensions: 232
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)