Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O05
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   0.37 
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   0.86 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   1.5  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   2.6  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    25   3.5  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   4.6  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    24   6.1  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   6.1  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    24   6.1  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   8.0  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    24   8.0  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    24   8.0  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    24   8.0  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    24   8.0  

>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 120 KGVSNFFWLIILPILNFQFL--VQVREDGFLSVRFTI 16
           + VS   W+ ++ ILNF F   V V + G  S RF+I
Sbjct: 56  RDVSTLDWIFLVDILNFSFWSDVDVEDSGKHSKRFSI 92


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 1   FNEQYYGEADTEKPVFP---DLDEELEIEN 81
           FNE YY E   +KP F    D+D+  +++N
Sbjct: 445 FNENYYEEDSAKKPEFGDDIDIDDIAQVDN 474


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   NEQYYGEADTEKPVFPDLDEELEIENWE 87
           N+ Y    +T+ P FP+ D  + + NW+
Sbjct: 70  NDIYECSNNTKSPCFPNSDSRIPLVNWK 97


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 153 KLVLGSHEDLMKGVSNFFWLIILPILNFQFLV-QVREDGFLSVRFTIIL 10
           K ++  H  L + V N F  + L I N  FL+ Q R    L+++ T IL
Sbjct: 114 KYLINGHRALQQNVQNLFQSVQLNINNPNFLIMQGRITKVLNMKATEIL 162


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 169 IFGKRETSAGFPRGLNERRIELLLVDNSPNSQFPIP 62
           I G      GFPR    +R  + + D SP SQ P P
Sbjct: 91  IMGNNFGFGGFPRMNRRQRRRMGIFDQSP-SQIPFP 125


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -1

Query: 163 GKRETSAGFPRGLNERRIELLLVDNS---PNSQFPIPRPSPGRR 41
           G+R  + G+  G     I  L+  +    PN QFP  RP P  +
Sbjct: 129 GRRVAAFGYHAGFAGSAISCLVWAHQLLHPNKQFPAIRPFPNEK 172


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 4   NEQYYGEADTEKPVFPDLDEELEIENWENYQPEE 105
           NE Y  E ++ K  FPD +E    E  E+Y  +E
Sbjct: 626 NEMYSDEENSSKGAFPD-EENENRELSEDYSGDE 658


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 82  NSQFPIPRPSPGRRVSQCPLHHNIVH 5
           NS    P  SPG R S  P+H  + H
Sbjct: 480 NSAASPPVSSPGLRRSHIPVHEGLKH 505


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 14  IMVKRTLRNPSSRTWTRNWKLRIGRIINQK 103
           I +K  L NP  R W +    R    IN++
Sbjct: 233 IYIKPLLENPDERNWAKLLPYRHSLFINER 262


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 210  ISLSFKLMTVLN*KYLENEKLVLGSHEDLMKGVSNF 103
            +S+SF ++T L+ K +  E  V  SH     G+ NF
Sbjct: 1482 VSISFSVLTNLDNKEVNLEDAVPASHRS-ASGIVNF 1516


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 49  PDLDEELEIENWENYQPEEVRYAFH 123
           PD+ EE  +E +EN Q +E  + F+
Sbjct: 439 PDMTEEEYLEKFENAQNQEWLHNFY 463


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 171 KYLENEKLVLGSHED 127
           ++LEN+KL L SHE+
Sbjct: 53  QFLENDKLDLNSHEN 67


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 1   FNEQYYG-EADTEKPVFPDLDEELEIENWENYQPE 102
           FN Q+   + D   PV PD DEE E E  +  + E
Sbjct: 155 FNIQWDNPDFDDAPPVQPDADEEEEEEEADEMEEE 189


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 165 LENEKLVLGSHEDLMKGVSNFF 100
           L N+KL+   H   + G+SN F
Sbjct: 726 LRNDKLIKSIHPGSLSGISNSF 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,112,885
Number of Sequences: 5004
Number of extensions: 19602
Number of successful extensions: 73
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)