Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O05
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0941 - 22763733-22763970,22764077-22764213,22764282-227644...    28   1.9  
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823...    27   3.3  
05_02_0085 - 6465126-6466049                                           27   5.7  
07_01_0594 + 4428440-4429837                                           26   7.6  
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134...    26   7.6  

>07_03_0941 -
           22763733-22763970,22764077-22764213,22764282-22764470,
           22765238-22765756,22766319-22767357,22767665-22767759,
           22768253-22768357
          Length = 773

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 127 LNERRIELLLVDNSPNSQFPIPRPSPGRRVS 35
           LN RR+   +VD++ N    +P P  G R+S
Sbjct: 362 LNFRRLRRKIVDSAKNDDILLPSPQEGSRLS 392


>04_04_1704 -
           35481041-35481461,35481682-35481810,35482291-35482397,
           35482515-35482583,35482825-35482936,35483013-35483131,
           35483211-35483291,35483629-35483700,35484039-35484239,
           35484442-35484528,35485284-35485523,35485991-35486455,
           35487434-35487556,35487643-35487769,35487851-35487919,
           35488061-35488189,35488628-35488722,35488808-35488876,
           35489332-35489443,35489545-35489663,35489753-35489833,
           35490898-35490969,35491052-35491267,35491524-35491601,
           35491694-35491831,35492403-35492414,35492639-35492872,
           35493076-35493130,35493222-35493352,35493813-35494546,
           35494613-35494820
          Length = 1634

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 148 SAGFPRGLNERRIELLLVDNSPNSQFPIPRPSP 50
           +A  P GLN+R + L        SQ P P P+P
Sbjct: 26  AAPTPNGLNDRLLRLTRTHQRGPSQNPNPNPNP 58


>05_02_0085 - 6465126-6466049
          Length = 307

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 88  SPNSQFPIPRPSPGRRVSQCPLHHNIVH 5
           SP    P+P  SPGRR     L   ++H
Sbjct: 115 SPQLPLPLPPVSPGRRTLFLDLDETLIH 142


>07_01_0594 + 4428440-4429837
          Length = 465

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 97  VDNSPNSQFPIPRPSP-GRRVSQCPLHHNI 11
           VD    S+ P+P PSP G  +  CP+  N+
Sbjct: 21  VDVDGRSRVPVPVPSPSGWELPPCPVLRNV 50


>01_05_0724 -
           24612712-24612852,24612985-24613038,24613340-24613429,
           24613499-24613780,24613926-24614119,24614379-24614508,
           24614610-24614690,24614766-24614891,24615019-24615076,
           24615319-24615380,24615753-24615803,24615946-24616065,
           24616280-24616403,24616832-24616920,24617304-24617396,
           24617910-24618063,24618673-24619178
          Length = 784

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 151 TSAGFPRGLNERRIELLLVDNSPNSQFPIPRPSP 50
           +SA FPR  + RR+ L L   +     P P P+P
Sbjct: 28  SSASFPRAGHHRRLPLPLRALASEGPQPAPSPAP 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,354,992
Number of Sequences: 37544
Number of extensions: 107272
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)