Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O04
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       26   3.4  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   6.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   6.0  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   7.9  

>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 146 MKVIIDSNIFVNILCMYIKREIFRISYKKYVPNTLW 39
           M ++I+      +L MY+  E F    KK++PN  W
Sbjct: 121 MSLLINQVETAILLTMYLDNENFSEIQKKWLPNMSW 156


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 20  HFSLPSTIVYWVHIFCMIF*IFHVLYTYTIYLQRYLN 130
           H ++   +VYW+ +F      F V ++  ++L  +LN
Sbjct: 78  HANIMRVVVYWIRVFLKRIYTFFV-HSARVFLYHFLN 113


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 88  VKYLEYHTKNMYPIHYGRRKTK 23
           +K +E+  KN+ P+H+G  K K
Sbjct: 588 LKKVEHFFKNILPLHFGLEKDK 609


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 131 DSNIFVNILCMYIKREIFRISYKKYVPNTLW 39
           DS+ ++ ++C   ++ I + S KKYV   +W
Sbjct: 76  DSSFYLGVICKLYEKAIDKHSGKKYV-EAIW 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,483
Number of Sequences: 5004
Number of extensions: 46339
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)