Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O01
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    31   0.14 
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    26   5.3  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    25   7.0  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   7.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.2  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.2  

>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -1

Query: 416 HVAKPLSNTFF*NIPWTFQQDSAPGHKARITQTW--LETNVTYFIRAEDWPSSSTDLNPL 243
           H  + +SN  F ++PW    +S  G+     + W  L  N  +F+     P +      L
Sbjct: 52  HFTESVSNDSFSSLPWQIFANSVAGNSPLQNEAWAFLMDNEDFFLPV---PMNPAQCTAL 108

Query: 242 DFILWSVL 219
           +  LWS++
Sbjct: 109 EIALWSLI 116


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 608 KQNDKVYAHSSKEAAQVVGKVQRGHRPASV 519
           K+  K+      E+   V KV+ G+RPAS+
Sbjct: 225 KKKKKIKLKDKPESTSSVEKVKEGNRPASI 254


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 87  QAFNLFGHESIDLRTVSKGNFATACSKDF 173
           QA   FG  S+DL + + G     CS DF
Sbjct: 13  QADAFFGQSSVDLISRALGGQVLGCSDDF 41


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 489 SLIRDAPPNHH*RRTMTTLYLSDHLSSFFRTVSVHFIILLIVVSFNR 629
           SL R  PPN    +   +LY ++ L SFFR  +     LL+V    R
Sbjct: 275 SLERTEPPNSLNSKISYSLYCNETLVSFFRRPAFSPDGLLLVTPAGR 321


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 446 LKFSLLFHKNVVL*LFDKRRPTKPSLTQDDDHVVPFRPLEQLL*NCERTLYHFAYCSVL 622
           L+  L   K  V   F+++   KP L + D  V+P      +L + ER L + +  S L
Sbjct: 93  LEQPLTTSKTRVFKSFNEKLKGKPQLVKSDKGVLPLNKQSDILNSYERVLSNASVDSAL 151


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 173 KIFGASGGEISLGNSA*IYRFVPKQIKGLYKSQRWSFRIERFLI 42
           KI GA  G I L     + +++    K  +  QRW F +++FL+
Sbjct: 222 KIVGAIFGIILLLFR--LKKYISHSKKSAFSPQRWKFLLDQFLL 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,698
Number of Sequences: 5004
Number of extensions: 55778
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)