Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_O01
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0899 - 24142210-24142293,24142589-24142634,24142773-241428... 29 2.4
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 29 3.1
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 29 3.1
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 29 3.1
11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445 29 4.1
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793 29 4.1
12_02_0745 - 22709630-22709815,22709895-22709993,22710088-227101... 28 7.2
10_01_0231 + 2442722-2442819,2442916-2443026,2443111-2443183,244... 28 7.2
05_04_0253 - 19407939-19407981,19409328-19409464,19409544-194096... 28 7.2
03_02_0288 - 7106736-7107555,7108028-7108584,7108720-7108937,710... 28 7.2
01_06_1366 - 36695031-36695129,36697608-36697706,36697801-366978... 28 7.2
08_02_1449 - 27174451-27178005 27 9.5
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343... 27 9.5
03_02_0289 - 7115045-7115867,7116373-7116929,7117327-7117544,711... 27 9.5
>12_02_0899 -
24142210-24142293,24142589-24142634,24142773-24142886,
24143445-24143566,24144361-24144480,24144581-24144664,
24144813-24144914,24145589-24145604,24147929-24148329
Length = 362
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 190 PYRLEQAMFSKTDHNMKSKGLRSVLDEGQSSALIKYVTLVSSQVWV 327
PY ++ K HN+ +KG R+++ G A+I + + +Q WV
Sbjct: 256 PYSMDIKSNIKFHHNVTTKGYRALVYSGDHDAMIPF---LGTQAWV 298
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 130 LFPREISPPLAPKIF*DSMSPYRLEQAMFSKTD 228
+FP+ A K+F + S +RLE+ FS+TD
Sbjct: 619 MFPKSTHETFATKMFRNFSSHHRLEKTKFSETD 651
>03_01_0300 +
2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 193 MATLSLKKSLEQAVAKFPLETVRKSIDSCPNRLKACIKAKGGHFE 59
+ATLS L A+ PLE + + +R K+C KA H+E
Sbjct: 239 LATLSWLSPLLSVGAQRPLELADIPLMAHKDRAKSCYKAMSSHYE 283
>02_05_0939 +
32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 130 LFPREISPPLAPKIF*DSMSPYRLEQAMFSKTD 228
+FP+ A K+F + S +RLE+ FS+TD
Sbjct: 494 MFPKSTHETFATKMFRNFSSHHRLEKTKFSETD 526
>11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445
Length = 330
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 317 WLETNVTYFIRAEDWPSSSTDLNP 246
W V ++ +EDWP S TD P
Sbjct: 270 WHHNRVRKYLTSEDWPKSETDGRP 293
>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
Length = 783
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = -2
Query: 382 KIYRGLSSKTLHLVTRHELPK-PGLKPTLRTL*ELKTGPHLAQTSTL*TSYYGQF*RTW- 209
KI++ +S+ L + + PK PG + R+ GP + T Y+G+ + W
Sbjct: 5 KIHKSTASRGLR--SGVQSPKNPGKRAASRSGASSSDGPRFGRF----TCYHGEEEKRWH 58
Query: 208 PALNDMATLSLKKSLEQAVAKFPLETVRKSIDSCPNRLKAC 86
P N++ S++K ++A + PL+ + + +D C + C
Sbjct: 59 PPANEILR-SIQKLYDEAARRLPLDEIPELVD-CLGEVGHC 97
>12_02_0745 -
22709630-22709815,22709895-22709993,22710088-22710160,
22710245-22710355,22710452-22710625,22710735-22710892
Length = 266
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 116 YRFTHCFQGKFRHRLLQRFFKTQC 187
YRF H +GK+R R L+R FK C
Sbjct: 151 YRFRHLVRGKWRER-LRRKFKFPC 173
>10_01_0231 +
2442722-2442819,2442916-2443026,2443111-2443183,
2443278-2443376,2443456-2443558,2444358-2444527
Length = 217
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 116 YRFTHCFQGKFRHRLLQRFFKTQC 187
YRF H +GK+R R L+R FK C
Sbjct: 73 YRFRHLVRGKWRER-LRRKFKFPC 95
>05_04_0253 -
19407939-19407981,19409328-19409464,19409544-19409642,
19409737-19409809,19409894-19410004,19410101-19410273
Length = 211
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 116 YRFTHCFQGKFRHRLLQRFFKTQC 187
YRF H +GK+R R L+R FK C
Sbjct: 98 YRFRHLVRGKWRER-LRRKFKFPC 120
>03_02_0288 -
7106736-7107555,7108028-7108584,7108720-7108937,
7109223-7109322,7110776-7110856
Length = 591
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 561 SGRKGTTWSSSCVSDGLVGRLLSKSY 484
+ R TTW +C L+G LL+ SY
Sbjct: 92 AARNVTTWQGTCYLTPLIGALLADSY 117
>01_06_1366 -
36695031-36695129,36697608-36697706,36697801-36697873,
36697958-36698068,36698163-36698335
Length = 184
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 116 YRFTHCFQGKFRHRLLQRFFKTQC 187
YRF H +GK+R R L+R FK C
Sbjct: 98 YRFRHLVRGKWRER-LRRKFKFPC 120
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -2
Query: 217 RTWPALNDMATLSLKKSL---EQAVAKFPLETVRK 122
R+WP+L +A SL SL EQ PLE+++K
Sbjct: 937 RSWPSLVTLALASLGNSLLPDEQQTTMPPLESIQK 971
>03_05_0331 -
23233883-23233972,23234099-23234164,23234300-23234365,
23234451-23234675,23234794-23235279
Length = 310
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 605 QNDKVYAHSSKEAAQVVGKVQRGHRPAS 522
+ND + + S AA+ GK Q GHR A+
Sbjct: 202 ENDSIGSQESPVAAKSNGKAQSGHRSAT 229
>03_02_0289 -
7115045-7115867,7116373-7116929,7117327-7117544,
7117829-7117928,7118665-7118832
Length = 621
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 564 SSGRKGTTWSSSCVSDGLVGRLLSKSY 484
S+ R TTW +C L+G L+ SY
Sbjct: 120 SAARNFTTWQGTCYLTPLIGATLADSY 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,947,298
Number of Sequences: 37544
Number of extensions: 339919
Number of successful extensions: 830
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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