Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N24
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0474 - 3666236-3668050                                           30   1.6  
10_01_0288 - 2992107-2992627,2992742-2992895                           28   4.9  
02_05_0541 - 29866396-29866881                                         28   4.9  

>11_01_0474 - 3666236-3668050
          Length = 604

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 134 PCLAIGGKCTETEMDCPADT-HINTKGLC 217
           PC A GG C ETE  C     H+    LC
Sbjct: 47  PCSAAGGSCAETEASCRNSAGHVVRLSLC 75


>10_01_0288 - 2992107-2992627,2992742-2992895
          Length = 224

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 176 DCPADTHINTKGLCPRQQDRGVECCHSGKYPLNANKTHER 295
           DC A  H  T   CP Q+   +     G +   A KTH R
Sbjct: 92  DCIAQLHSATNEPCPGQEPSKIVPMSEGTFAAVAGKTHYR 131


>02_05_0541 - 29866396-29866881
          Length = 161

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 246 HSTPLSCCRGHRPFVLI*VSAGQSISVSVHFPPIARQGCSS*SNVTSKKSYN 91
           HS P  C  GH+  + + VS  Q  + +VH   + R+G +S   + S  +++
Sbjct: 76  HSRPCICLEGHQIRLALSVSGRQGPATAVHHFILPRRGRASSGLLVSAAAFS 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,865
Number of Sequences: 37544
Number of extensions: 333929
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)