Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_N23
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 173 7e-44
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 171 3e-43
01_05_0708 + 24477228-24477375,24477823-24477905,24478233-244783... 42 4e-04
04_04_1362 + 32897581-32897925,32897979-32897984 30 1.0
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 3.1
03_01_0427 + 3296717-3296861,3296966-3297210 28 5.3
08_02_0628 + 19459198-19459674,19459751-19459894,19460191-194604... 27 9.3
02_05_0625 + 30453521-30453890,30454215-30454352,30454458-304547... 27 9.3
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 173 bits (421), Expect = 7e-44
Identities = 84/121 (69%), Positives = 96/121 (79%), Gaps = 1/121 (0%)
Frame = -2
Query: 528 TAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEF 352
TA AIRKLPL +A RYL++V K+ IPFRR+ GGVGR AQAK + QGRWP KSA F
Sbjct: 32 TAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARF 91
Query: 351 LLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCL 172
+L LL+NAESNA+ KGLDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCHIE+ L
Sbjct: 92 ILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
Query: 171 S 169
S
Sbjct: 152 S 152
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 171 bits (416), Expect = 3e-43
Identities = 82/121 (67%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Frame = -2
Query: 528 TAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEF 352
TA A+RKLPL +A RYL++V K+ IPFRR+ GGVGR AQ K + QGRWP KSA F
Sbjct: 44 TAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARF 103
Query: 351 LLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCL 172
+L LL+NAESNAD KGLDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+E+ L
Sbjct: 104 ILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELIL 163
Query: 171 S 169
S
Sbjct: 164 S 164
>01_05_0708 +
24477228-24477375,24477823-24477905,24478233-24478391,
24478882-24478992,24479098-24479164,24479269-24479537
Length = 278
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -2
Query: 369 KKSAEFLLQLLRNAESNADYK-GLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 193
K++A+ + Q++ +A +NA + GLD D+L+++ V + L+R +Y A GR +
Sbjct: 159 KRAAKTVYQVIHSARANAAHNHGLDPDKLIVEEAFVGKGLYLKRLSYHAKGRCGVMVRPR 218
Query: 192 CHIEV 178
C + V
Sbjct: 219 CRLTV 223
>04_04_1362 + 32897581-32897925,32897979-32897984
Length = 116
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 335 LKSWSRNSADFLGQRPCVVPNCLACAQRPTPPLKRRKGMH 454
L++W R SA + RP + ACA+ P +R +G +
Sbjct: 14 LRAWIRRSATAVALRPLLTGVAAACAEAIASPARRGRGRY 53
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -2
Query: 441 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADYKGLDVDRLVIDHIQ 268
R +G V RC R K EF Q+ + +E S + + L + + I H+
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068
Query: 267 VNRAPCLR 244
+ APCLR
Sbjct: 1069 GSSAPCLR 1076
>03_01_0427 + 3296717-3296861,3296966-3297210
Length = 129
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 380 PCVVPNCLACAQRPTPPLKRRKGM 451
PCV+PNC A A R P L + M
Sbjct: 92 PCVIPNCKASAARLCPLLLSQSHM 115
>08_02_0628 +
19459198-19459674,19459751-19459894,19460191-19460431,
19460616-19461116,19461226-19461635
Length = 590
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 493 CCPLPKECDRKEGMHSLPSF*RWSWPLCT 407
CCP P + G HS S +SWP T
Sbjct: 32 CCPSPLQPIASGGQHSESSAAYFSWPTST 60
>02_05_0625 +
30453521-30453890,30454215-30454352,30454458-30454727,
30454844-30454983,30455067-30455213,30455319-30456008
Length = 584
Score = 27.1 bits (57), Expect = 9.3
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +1
Query: 271 NMINHEPVNV*TFVVSI*FSIPQKLEQEFCRFLGPTTLCGTKLFSLCTTANSTVKTTEGN 450
++ NH + T VV FSI L + R LG T G F+L + S+ GN
Sbjct: 103 DLANHAVWAILTVVVVFEFSIGATLSKGLNRGLGTLTAGG---FALAVSELSSSMGNFGN 159
Query: 451 AFLLFC 468
L+ C
Sbjct: 160 VILIIC 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,539
Number of Sequences: 37544
Number of extensions: 222958
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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