Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N23
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   192   2e-49
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   106   8e-24
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   2.7  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  192 bits (467), Expect = 2e-49
 Identities = 88/119 (73%), Positives = 101/119 (84%)
 Frame = -2

Query: 525 AMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLL 346
           AMA+R +PLRRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQGRWP KSA+FLL
Sbjct: 35  AMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQGRWPVKSADFLL 94

Query: 345 QLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 169
            LL+NAESNA+YKGLDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 95  DLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  106 bits (255), Expect = 8e-24
 Identities = 49/60 (81%), Positives = 53/60 (88%)
 Frame = -2

Query: 348 LQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 169
           L LL+NAESNA+YKGLDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 345 GAGILQISWANDPVWYQTV*LVH 413
           GAG+ +I W N+  W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -2

Query: 486 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 307
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 306 GLD 298
           G +
Sbjct: 554 GYE 556


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -2

Query: 486 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 307
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 306 GLD 298
           G +
Sbjct: 554 GYE 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,374,931
Number of Sequences: 27780
Number of extensions: 182744
Number of successful extensions: 495
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)