Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N21
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    55   9e-09
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    27   2.8  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    27   2.8  
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    27   2.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   3.7  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   4.8  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    26   4.8  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   6.4  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   6.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   6.4  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   8.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   8.5  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 28/71 (39%), Positives = 41/71 (57%)
 Frame = +3

Query: 345 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTG 524
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + ++D+FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60

Query: 525 ECRYGLFDFEY 557
           +CRY ++DFE+
Sbjct: 61  DCRYAIYDFEF 71


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -3

Query: 509 LQVFEKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYFFVCRFASVRYCHTRRHFLM 330
           +QV EK +V G      F   L       H + +FL+   ++ CR  SVR     R  L+
Sbjct: 271 VQVGEKCVVMGQVVPVNFKFTLLGEVKF-HKLRLFLMERRYYYCRQRSVRRKEKTRQLLL 329

Query: 329 LKHVKIAP---LILTTPRQQRPE 270
             + + AP    +L+  +Q RP+
Sbjct: 330 --YERSAPKNQCLLSDWKQVRPD 350


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +3

Query: 372 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTGECRYGLFDF 551
           K + + ++ + K ++     +D K+ D + +  +  EY SF ++L+   TG+  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166

Query: 552 E 554
           +
Sbjct: 167 Q 167


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 338 FLMLKHVKIAPLILTTPRQQRPERHCSE 255
           FL  KHVK+A ++L   RQ+R +   +E
Sbjct: 139 FLEPKHVKLAGIVLLLDRQERLDPEVNE 166


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 446  LFLVANVEHHVAVFLILFY--FFVCRFASVRYCHTRRHFLMLKHVKIAPL 303
            +F++A + +   +F+IL    FF+ R+  V Y  T R    L  V  +PL
Sbjct: 1031 VFVLAVICYSSPMFMILIVPLFFLYRYNQVYYTQTSRELKRLDSVTRSPL 1080


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 351 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGR 473
           VT  D  KT  +  +K  KH+ V  YIR  K +D   +GGR
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVD---IGGR 149


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 289 HDNSDRNDTVRNVGSPFFTATNQRMRQNNCPSQHTIPLNEGHN 161
           H NS  +D   +  S   T++   M+  N PSQ  +P+ +  N
Sbjct: 245 HHNSQEDDGKLSCSSKDVTSSGFSMKGLNEPSQERLPVEKEQN 287


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 556 YSKSKRPYLHSPVPPFCRSSRKLSYSALRPPTVSTS 449
           Y+KS++ ++ S   P C + + LS S++   T +T+
Sbjct: 289 YAKSQKKWIQSRFLPMCLAQQDLSPSSILFSTTNTT 324


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 385 KK*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRR 513
           K+ + + N+A    TFA      SKP+  V+P++  F+ T  R
Sbjct: 264 KRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSS-PFTSTLSR 305


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 595 FLLASDVPWH*CVYSKSKRPYLHSPVPPFCRSSRKLSYSALRPPTV 458
           +++ S   +H C  S ++ P+ HS  PP            LRPP V
Sbjct: 115 YMVQSPTSYHAC--SNNQSPFPHSHHPPLHNPLPVSCQPVLRPPPV 158


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 354 TVSDACKTTYEEIKKDKKHRYV 419
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 30   CRKLSSCRLSNFDDFNYYLFKQLLTSI*N*QFYTLSV*NKWYCLLCPSFKGIV 188
            C K     L+  DDF Y+++  LL       FY LS    W+ LL  +F+ I+
Sbjct: 980  CEKEQQSLLAELDDFFYWIYVNLLPKP---LFYLLS--RLWFGLL-ETFRDIL 1026


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,053
Number of Sequences: 5004
Number of extensions: 46320
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)