Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N21
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       65   4e-11
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    65   4e-11
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       43   2e-04
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    43   2e-04
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    43   2e-04
L16560-4|AAA27997.1|  111|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical ...    27   7.7  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
 Frame = +3

Query: 339 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 512
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VG +NA Y  F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 513 -GGTGECRYGLFDFEYTHQCQGTSEAS 590
                ECRY   D E T Q QG    S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTS 87


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
 Frame = +3

Query: 339 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 512
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VG +NA Y  F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 513 -GGTGECRYGLFDFEYTHQCQGTSEAS 590
                ECRY   D E T Q QG    S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTS 87


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 19/104 (18%)
 Frame = +3

Query: 339 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 473
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE                   
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 474 NAEYDSFLEDLQK--GGTGECRYGLFDFEYT--HQCQGTSEASK 593
            A +D F+ED++       +CRY +FDF++T      GTS+  K
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAGTSKMDK 103


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 19/104 (18%)
 Frame = +3

Query: 339 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 473
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE                   
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 474 NAEYDSFLEDLQK--GGTGECRYGLFDFEYT--HQCQGTSEASK 593
            A +D F+ED++       +CRY +FDF++T      GTS+  K
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAGTSKMDK 103


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 19/104 (18%)
 Frame = +3

Query: 339 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 473
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE                   
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 474 NAEYDSFLEDLQK--GGTGECRYGLFDFEYT--HQCQGTSEASK 593
            A +D F+ED++       +CRY +FDF++T      GTS+  K
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAGTSKMDK 103


>L16560-4|AAA27997.1|  111|Caenorhabditis elegans Hypothetical
           protein D2007.1 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 247 CQHSEQCRSGRCCR 288
           C+ SEQCR+G+C R
Sbjct: 98  CKTSEQCRNGKCSR 111


>AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical
           protein F12E12.5 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 269 RHCSECWQSFFHSDQ-SAHASKQLPESTHY 183
           + CS C ++FF  DQ   H    L E +H+
Sbjct: 91  KKCSTCQRTFFREDQLQRHLHNHLKERSHF 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,406,196
Number of Sequences: 27780
Number of extensions: 274369
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)