Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N20
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    31   0.15 
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    31   0.15 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.82 
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    28   1.1  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    27   1.9  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   1.9  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    27   3.3  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   4.4  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   7.7  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   7.7  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   7.7  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 213 VVDYAKKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYI 347
           ++DYA K     +   V  +  DDDL++IS  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +3

Query: 468 FDNYH--KNVI--RPEFVTPNEETEQTTYINTILATGPIRTLMNFLVSKGLTQMTEYNEQ 635
           FDNYH   + I   P+F  P +     + I+   +  P+   +  L++  L Q+T+Y+ +
Sbjct: 351 FDNYHWMPDPIDAAPDFKKPTDRDVVGSLISIFKSKEPLVKELQLLLADRLLQLTDYHYE 410

Query: 636 VQLLQKIWFTKY 671
           V+  + I F KY
Sbjct: 411 VE-AKNIEFLKY 421


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 22/91 (24%), Positives = 39/91 (42%)
 Frame = +3

Query: 261 VQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSG 440
           ++  T   DLL++ +++ + D N A + +    +   S +   D A       PEN+   
Sbjct: 549 LEQETIPSDLLKVRKDLLD-DSNAAKDTMDKVKKHLKSLLRVGDTARKEF-TWPENMPKP 606

Query: 441 PTIRPFVALFDNYHKNVIRPEFVTPNEETEQ 533
             +   V     YH+ V+R  F+    E EQ
Sbjct: 607 CEVMQQVVQLMKYHRAVMRENFIILGPEVEQ 637


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 339 NYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPT 446
           NY++  +Q K +  SK DE S +LLN    +   PT
Sbjct: 139 NYVRFFIQPKLNNTSKLDEISDSLLNAFSKLKEEPT 174


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 183 LQQIGTVVGGVVDYAKKKSYDDML--RQVQDSTTDDDLLRISEEMFNADINNAFNYIQ 350
           L+++G+   GVV  A++    D++  +Q+   T  DD+  I +E+F     N+ N IQ
Sbjct: 12  LRKLGSGSFGVVWKARENVSGDIIAIKQIDLETGIDDITDIEQEVFMLSNCNSSNVIQ 69


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 584 HKGTNRSGGEYSVDVRCL 531
           H GT+ SGG Y+VDV+ L
Sbjct: 444 HHGTSASGGHYTVDVQQL 461


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 246 DMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQG 365
           D+ RQV       DL+R+ +  F  D  N F++ + S  G
Sbjct: 349 DLGRQVNSEAHMVDLVRLKQGSFALDDENCFDFSEFSAPG 388


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = +3

Query: 303 EEMFNADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTI-RPFVALFDNY 479
           E+ F  D +   N I    Q +  P +       + L  P +  +       F   F+N 
Sbjct: 178 EDDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDDFDIDFNNE 237

Query: 480 HKNVIRPEFVTPNEETEQTTYINTILATGP 569
            +++ R +  +PN   ++  YI++ ++  P
Sbjct: 238 TESIFRKKIRSPNTINQKHPYISSTISYQP 267


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +3

Query: 33  MRIILILLVSLGLCHADDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVV 206
           M + LI+ VS GL   + ++  +   FN +LP +I NS  G + + + N  + IGT++
Sbjct: 73  MVVGLIIRVSPGLIIQNMVSFHSTYFFNVLLPPIILNS--GYELHQS-NFFRNIGTIL 127


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 228 KKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNA 335
           KK+S +D L Q+     DD++LR+ E+M  A + +A
Sbjct: 173 KKRSNEDNLEQM----ADDEVLRLREQMRLAALRDA 204


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 546 NTILATGPIRTLMNFLVSKGLTQMTEYNEQV 638
           + +L    IRTL + L+  G  + TEY + +
Sbjct: 571 SVVLKCTAIRTLTDMLIQHGKAKFTEYEDAI 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,497
Number of Sequences: 5004
Number of extensions: 53026
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)