Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_N19
(296 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0491 + 4093952-4094145,4094336-4094642,4094700-4094799,409... 28 1.1
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758... 28 1.5
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 27 2.0
10_08_0671 - 19759121-19759312 27 3.5
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616 27 3.5
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 27 3.5
05_07_0223 - 28496877-28497398 27 3.5
12_02_0046 + 12830974-12832386 26 4.6
08_02_1622 - 28309472-28309871,28310362-28310399 26 4.6
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 6.0
10_06_0037 + 9932967-9933112,9934815-9934822,9935213-9935349,993... 26 6.0
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 26 6.0
04_01_0281 + 3760014-3760027,3760138-3761071 26 6.0
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 25 8.0
>05_01_0491 +
4093952-4094145,4094336-4094642,4094700-4094799,
4094823-4094953,4095546-4095823,4095909-4096225,
4096322-4096506
Length = 503
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 174 PGNSIPVIIKSMAPYVKMRNIYLQARLGDKIVGK 275
PG S P+ + S APY MRN + + I GK
Sbjct: 151 PGPSAPMNVVSPAPYYSMRNFTVLEKCSFIIFGK 184
>10_08_1053 -
22575281-22575409,22575516-22575653,22575786-22575884,
22576281-22576361,22577171-22577233,22577473-22577520,
22577622-22577990,22578082-22578183,22578290-22578414,
22578500-22578566,22578817-22578895,22578928-22579079,
22579182-22579223
Length = 497
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 271 PTILSPRRAWR*MFLIFTYGAMLLIITGIELPGFTVALLGVMVYG 137
P +L+P ++R I + +LL++ LP F LG ++YG
Sbjct: 33 PLLLAPHESYRLSAAILPWVPLLLLLLPPLLPCFLFPALGGLLYG 77
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 130 YHHHTPS--PQAKPQ*SLVIQFQ*LSRAWHR 216
+HHHTPS P + PQ SL Q S A HR
Sbjct: 20 HHHHTPSVGPSSPPQDSLAAQAMRASAA-HR 49
>10_08_0671 - 19759121-19759312
Length = 63
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 73 RNIVIMIFMLCGFHSNLTELRRR 5
R IV+++ L GFH ++T RRR
Sbjct: 21 RRIVLLLKQLQGFHRSMTRPRRR 43
>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
Length = 695
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 65 DVPVYDSGCDSSDPRRCQCA*STTTIHHHPKQSHSEAW*FNSSDYQEHGTVRKNEKHLPP 244
DVPVY + +S+ +R +C + + KQS FN +D G N ++P
Sbjct: 349 DVPVYPAIAESAFDQRKECFTEEDSENARQKQS------FNHTDMVFSGLGNSNRAYMPD 402
Query: 245 GSSRGQDRR 271
++ D R
Sbjct: 403 HLNKNPDIR 411
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
Frame = +2
Query: 203 EHGTVRKNE---KHLPPGSSRG 259
+HGT+R ++ KH+PPG++ G
Sbjct: 486 KHGTIRWDQLQQKHIPPGTAEG 507
>05_07_0223 - 28496877-28497398
Length = 173
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 214 GAMLLIITGIELPGFTVALL 155
GA+LL++TG+ L G VAL+
Sbjct: 59 GAVLLLLTGLTLTGAVVALI 78
>12_02_0046 + 12830974-12832386
Length = 470
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 132 PPPYTITPSKATVKPGNSIPVIIKSMAPYVK 224
P P ++ + A V P +PVI + AP +K
Sbjct: 245 PAPPSLRTAPAAVAPPRQVPVITQQQAPPLK 275
>08_02_1622 - 28309472-28309871,28310362-28310399
Length = 145
Score = 26.2 bits (55), Expect = 4.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 164 GFAWGDGVWWWYFK 123
G W GVWWW ++
Sbjct: 33 GGKWRQGVWWWRWR 46
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 291 SN*WYTCRRSCPLDEPGGRCFSFLRTV 211
+N Y C S P+D+ G +C S R +
Sbjct: 154 ANSLYDCDSSSPIDDFGSQCLSVFRAM 180
>10_06_0037 +
9932967-9933112,9934815-9934822,9935213-9935349,
9935761-9936438
Length = 322
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 152 GDGVWWWYFKRIDSDEGHCCHNRCRIQE 69
GDG+WWW ++ G + R +E
Sbjct: 8 GDGLWWWLKEKGKEKNGFISPRQSRWRE 35
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 95 CHNRCRIQEH 66
CH+ CRIQEH
Sbjct: 10 CHHNCRIQEH 19
>04_01_0281 + 3760014-3760027,3760138-3761071
Length = 315
Score = 25.8 bits (54), Expect = 6.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 158 AWGDGVWWWYFKRI 117
+W G WWW+F R+
Sbjct: 2 SWNKG-WWWHFDRV 14
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 130 YHHHTPSPQAKP 165
+HHH P PQA P
Sbjct: 62 HHHHPPPPQAAP 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,585,605
Number of Sequences: 37544
Number of extensions: 166499
Number of successful extensions: 488
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -