Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N17
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    29   0.40 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   0.92 
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    27   2.1  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    26   4.9  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   4.9  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    26   4.9  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    26   4.9  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   6.5  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   6.5  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   8.6  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   8.6  

>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 319 ITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW--TLAELNEAIANPATNPELIHYLET 492
           ++E   +LK  H   + PE  +K+      + TW      LN+AI+N  +N       + 
Sbjct: 381 LSELIDFLKREHPPEDTPEKRVKIKRIRTLLDTWQQEWRILNKAISNAESNS---GRGQN 437

Query: 493 ARTKLTSESEFQNKET 540
           ++TK TS +  +NK T
Sbjct: 438 SKTKTTSVNLSRNKRT 453


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 16/78 (20%), Positives = 41/78 (52%)
 Frame = +1

Query: 220 QSLISPKGSSIWTMEELDEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVR 399
           + ++S + S   T+ +++ A+++ ST+ +  P  +    Y++      N+P +S+ V  +
Sbjct: 190 KKVLSAEDSVRETITDIETALQNMSTSASRTPNDSSPLPYIE------NRPASSLAVSEK 243

Query: 400 AMDISTWTLAELNEAIAN 453
             ++  W+  E+ E + N
Sbjct: 244 IQNVPNWSTEEVVEWLMN 261


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 265 ELDEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVY 393
           E DE +K+PS    +      S  YL  ++   N+PEN  K +
Sbjct: 282 EDDELVKNPSVTKGHPEIHESSENYLSRSNTVENEPENIEKQF 324


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 454 PATNPELIHYLETARTKLTSESEFQN-KETISIVTKVGLVHKVPNLQ 591
           P  +PE+ HY+++   KL     + + ++ I  VT+  LV  +  +Q
Sbjct: 161 PDYDPEIFHYMQSLERKLAPPPNYMSVQQEIDWVTRHMLVDWIVQVQ 207


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +1

Query: 298 NPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNEAIAN---PATNP 468
           +PNY PA T    Y +  H+       + K + +A ++   +  E  EA+A     A   
Sbjct: 571 DPNYAPAYTSLGLYYRDIHD----MVRATKCFQKAFELDA-SQVEAAEALAKTFAEANEW 625

Query: 469 ELIHYLETARTKLTSESEFQNKE 537
           EL+  + + R   TSE++ + K+
Sbjct: 626 ELVEVI-SRRVLNTSENDLKRKK 647


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 460 TNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVP 582
           T+P+ I  L    T LT+E E  N + ++ VTK   V   P
Sbjct: 55  TDPDAIVELSKKCTLLTTEIEHINTDALAAVTKSVAVEPSP 95


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
 Frame = +1

Query: 271 DEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNEAIA 450
           D  I+      + L AI    +  K   +  NK +      ++ ++ S   L E  E ++
Sbjct: 51  DMGIESVGHRIDILSAIQSMKKQQKDKLQQENKDQE-----LKNIEESYKKLEEKTEHLS 105

Query: 451 NPATNPEL-IHYLETARTKLTSESEFQNKETISIVTKVGL 567
           +   + E  + YLET  TKL       N E + ++ K+ +
Sbjct: 106 DDNVSLEKRVEYLETENTKLVKTLNSLNSEFLQLLRKIAI 145


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +1

Query: 121 DKNFDPELKPYLEEAFNAI----VYSMFTNKNLDLTSQSLISPKGSSIWT 258
           D  F+ E KP +    +++    V S+ TN+  D  S    S  GS+ WT
Sbjct: 723 DMMFEEEQKPIVPIDLSSMQDDQVSSLTTNEEFDPLSSFQASHSGSNFWT 772


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 ELEKVLHDKNFDPELKPYLEEAFNAI 177
           E   +   K   PELKP L EAF  I
Sbjct: 531 ERSSISPSKPLSPELKPLLNEAFQDI 556


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +1

Query: 85  TWTYDELEKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNLDLTSQSLISPKGSSIWTME 264
           T  +D+ + + H  + + ++   +EE FN++  S +      L + + +S +  S  T  
Sbjct: 519 TMNFDDDQTLPHSVS-ESDIVDIIEEVFNSVEASRYIIVQYGLFALTKLSARLGSSSTAS 577

Query: 265 ELDEAIKDPSTNPN 306
            +D+ I     N N
Sbjct: 578 RIDKIIYSYKRNKN 591


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  DELEKVLHDKNFDPELKPYLE 159
           D L++V HD   D ELK +LE
Sbjct: 303 DTLKQVQHDAENDEELKDWLE 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.128    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,315
Number of Sequences: 5004
Number of extensions: 44695
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)