Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N17
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    30   1.2  
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604...    28   5.0  
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875...    28   5.0  

>04_04_0613 +
           26617677-26617963,26618726-26618786,26619598-26619832,
           26619958-26620196,26620493-26620744,26620844-26621024,
           26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 205 LDLTSQSLISPKGSSIWTMEELDEAIKDPSTNPNYLPAITESYRYLKSTHE 357
           LDLT + +   K  S+  M+E D+ +     +P + P+I E  RYL S  +
Sbjct: 254 LDLTKKGVCVLKNCSMLVMDEADKLL-----SPEFQPSIQELIRYLPSNRQ 299


>03_02_0161 +
           6046949-6047063,6048759-6048844,6049029-6049094,
           6049408-6049860,6049960-6050115,6050319-6050465,
           6050570-6050641,6050730-6051293
          Length = 552

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +1

Query: 325 ESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTK 504
           E  + ++  HE     E S +  V  ++  T T+AEL E+I +       + + +    K
Sbjct: 231 ELKKQMEIYHEENKLLEKSNRQQVLDIERLTHTIAELEESILSTGDVANAVRFYQNQAAK 290

Query: 505 LTSESEFQNKE 537
           L  E     +E
Sbjct: 291 LNEEKRTLERE 301


>01_06_0880 +
           32687018-32687060,32687142-32687219,32687323-32687532,
           32687868-32689744
          Length = 735

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 490 TARTKLTSESEFQNKETISIVTKVGLVHK 576
           TA   +T E    NK++ ++V K+ LVHK
Sbjct: 130 TASVSITIEDTTSNKDSSTLVEKIKLVHK 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.128    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,426,005
Number of Sequences: 37544
Number of extensions: 264223
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)