Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N17
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical p...    31   0.48 
Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z37092-3|CAA85454.1|  266|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family ...    28   5.9  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U56964-5|AAB54032.1|  454|Caenorhabditis elegans Warthog (hedgeh...    27   7.9  

>U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical
           protein C37C3.3 protein.
          Length = 265

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 25/111 (22%), Positives = 47/111 (42%)
 Frame = +1

Query: 256 TMEELDEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAEL 435
           T+E   E +++ STN   L  +  +   LK+   H N   + ++  +  +D       E+
Sbjct: 134 TLEHQRETLENASTNAEVLTVMKLASDALKAV--HNNMDSDQVRDMMDNIDEQREVAKEI 191

Query: 436 NEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNL 588
            +AI+NP  N   I   +  R  +  E E  +K+ +        +   PN+
Sbjct: 192 ADAISNPGFN-NAIDEADLLRELVDLEQEALDKDLLDARAPPVTLPDTPNI 241


>Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical
           protein ZK856.9 protein.
          Length = 455

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 23/81 (28%), Positives = 34/81 (41%)
 Frame = +1

Query: 232 SPKGSSIWTMEELDEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDI 411
           +P+   +   +E  E + D    P  +P IT  +     + E    PE+ IK Y R   I
Sbjct: 6   TPEPKEVEDYQEDGEILDDDDDVPTEIPNITSEFLVNYPSSEDEKSPEDVIKAYKR--KI 63

Query: 412 STWTLAELNEAIANPATNPEL 474
                 E NE    PA +P+L
Sbjct: 64  ENQKNVE-NEESVIPAIDPKL 83


>Z37092-3|CAA85454.1|  266|Caenorhabditis elegans Hypothetical
           protein F44F4.3 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +1

Query: 91  TYDELEKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNLDLTSQSLISPKG-SSIWTMEE 267
           TY E ++  H + F    +P  +     I   + +    D+T + +   +  SSI  ME 
Sbjct: 31  TYSEDKRAFHSRLFHVFYEPDFKSVAEMIKCQL-SGTVKDVTLEEIQGKRELSSICKMEA 89

Query: 268 LDEAIKDPSTNPNYLPAITESYRY 339
               I+D +   NY+  IT   ++
Sbjct: 90  YTSKIEDKTKQRNYMATITRQLKF 113


>AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family
           protein 32 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/87 (20%), Positives = 32/87 (36%)
 Frame = +1

Query: 100 ELEKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNLDLTSQSLISPKGSSIWTMEELDEA 279
           E   ++ DK  D       +  FN +      ++    T   L      + W  E ++ +
Sbjct: 356 EKSSIVRDKKNDENCLDEFDRVFNEL------DQQFTPTENQLQDLSNCTTWNQEPINNS 409

Query: 280 IKDPSTNPNYLPAITESYRYLKSTHEH 360
           I+    N N  PA+ E+     +  EH
Sbjct: 410 IQSNQLNNNIAPALEENVEDDNAIFEH 436


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +1

Query: 121 DKNFDPELKP-----YLEEAFNAIVYSMFTNKNLDLTSQSLISPKGSSI 252
           ++NF+  + P     YL     A++YS+  N N+D+     ++P G  I
Sbjct: 534 NRNFEGRIHPHVRANYLASPPLAVLYSIIGNVNVDINGVLAVTPDGKEI 582


>U56964-5|AAB54032.1|  454|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 2 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 271 DEAIKDPSTNPNYLPAITE-SYRYLKSTHEHG 363
           D+ IK PS NPN++P +   +  Y   T E G
Sbjct: 77  DQFIKSPSKNPNFVPQLAICTDEYKSKTCEEG 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.128    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,277
Number of Sequences: 27780
Number of extensions: 245338
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)