Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N14
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    27   2.4  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    26   3.2  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   4.2  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    26   4.2  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   4.2  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    26   4.2  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   7.3  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   9.6  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
 Frame = +3

Query: 45  NIIICNYISPYKRAYSFIIYVYLSIKFNATKISIKSLER-VMNPYIYLLRTNKLLHSRCY 221
           +I+ C+Y +  ++ YSF+      I F  T I+ KS E  +++  ++LL    L   R +
Sbjct: 209 DILKCHYETIDEKDYSFV----KMINFAETIIANKSNEGYLLSRILFLLMNMTLARKRIF 264

Query: 222 -------HQLPFLEFYQQTTGLTICNKSFDKIKKKHPHIQTLSHERLQCTLQILQKFGIT 380
                    L   E               D+I+K  P +   +   L C    ++   ++
Sbjct: 265 LVPKASMRPLKLREPEDDIENRQFSEYVADRIRKSFPDVSFKNLHVLSC----MEDSVMS 320

Query: 381 PLEACQNI--HIFSMNPITMDNYGEILKE 461
           P     ++   + S++PI MD++G+ L++
Sbjct: 321 PFRELGSVTSSMSSLSPILMDSFGDDLQK 349


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 117 IKFNATKISIKSLERVMNPYIYLLRTNKLLHSRCYHQL 230
           +KF+   +S  S++RV+N   Y+L+  +   S   H+L
Sbjct: 401 LKFDDDFVSNSSIDRVLNQQAYILQYKRKSTSSSKHKL 438


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +3

Query: 138 ISIKSLERVMNPYIYLLRTNKLLHSRCYHQLPFLEFYQQTTGLTICNKSFDKIKKKHPHI 317
           I I  L+ V  P I  LRT+++       Q+ +L+F    +     + SF  ++  HP  
Sbjct: 96  IHIVFLDMVKEPLINKLRTSRIASKIRTVQVAYLDFTSLESRYFQVHDSFSGLRLYHPSN 155

Query: 318 QTLSHERL 341
             +  + L
Sbjct: 156 AAIIRQEL 163


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 402 IHIFSMNPITMDNYGEILKEC 464
           I ++S+NP+T++ +   L++C
Sbjct: 133 IQLYSVNPVTLETFFSYLRKC 153


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 378 TPLEACQNIHIFSMNPITMD 437
           T L++ Q++HI +M P T+D
Sbjct: 413 TILDSLQSVHILNMEPYTLD 432


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 354 QILQKFGITPLEACQNIHIFSMNPITMDNYGEI---LKECQFVQISPEFIIKYHTIVKSK 524
           Q+ +  G+ PL+A  N + F  N    D+ G++      C + +  PE  +KY  I+ SK
Sbjct: 296 QVYKHVGVVPLKAI-NAYDFDDNIWGYDD-GDLCIHFAGCNYFKNCPEKFLKYAQILSSK 353

Query: 525 TISE 536
             S+
Sbjct: 354 QGSD 357


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 216 CYHQLPFLEFYQQTTGLTICNKSFDKIKKKHPHIQTL 326
           C+   P    Y +     IC++ F +I++  PH+ T+
Sbjct: 154 CFLYYPSNFNYTRCCAQPICSECFVEIRRAEPHLPTV 190


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 120 KFNATKISIKSLERVMNPYIYLLRTNKLLHSRCYHQLPFLEFYQ 251
           K+N   I+ K L  + N  +Y  + N    +R YH  P L  YQ
Sbjct: 20  KYNIYNIARKQLPALNNRTLYQKKWNAKKETRSYHG-PQLREYQ 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,997
Number of Sequences: 5004
Number of extensions: 38080
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)