Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N14
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220...    32   0.26 
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611...    29   3.2  
10_02_0005 - 4065845-4065970,4067856-4067913,4067982-4068040           28   4.2  
06_01_0465 - 3304417-3306834                                           28   4.2  
03_02_0863 - 11889492-11889761,11890257-11890421,11890518-11890637     28   5.6  

>04_03_0153 + 11919769-11919880,11920190-11920488,11921909-11922024,
            11922113-11922248,11922959-11923006,11924130-11924228,
            11924317-11924385,11924465-11924599,11924687-11924755,
            11925221-11925276,11925465-11925624,11926534-11926698,
            11927484-11927568,11927646-11927849,11928396-11928487,
            11928571-11928613,11930727-11930884,11931520-11931630,
            11931947-11932012,11933716-11933784,11934181-11934255,
            11934330-11934506,11934598-11934683,11936259-11936313,
            11936901-11936939,11938105-11938230,11938319-11938432,
            11939208-11939265,11939485-11939623,11939698-11939783,
            11939842-11940041
          Length = 1148

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = +3

Query: 138  ISIKSLERVMNPYIYLLRTNKLLHSRCYHQLPFLEFYQQTTGLTICNKSFDKIKKKHPHI 317
            I + SL+   NPY+ +  TNK + S     L   + Y   + L I  +S    +  H  I
Sbjct: 911  IEVDSLQGETNPYLQIKGTNKEIVSSAASALSLDDSYTTKSYLQIILESLPADENVHTGI 970

Query: 318  QTLSHERLQCTLQILQKFG 374
                  RLQ  ++ +Q  G
Sbjct: 971  HNQQAARLQELVEFIQSQG 989


>04_03_0807 -
           19860041-19860132,19860248-19860347,19861101-19861170,
           19861344-19861407,19862531-19862704,19862805-19862946,
           19863413-19863544,19863616-19863705,19864093-19864152,
           19864227-19864343,19864441-19864611,19866909-19866984,
           19867156-19867223
          Length = 451

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 138 ISIKSLERVMNPYIYLLRTNKLLHSRCYHQLPFLEFYQQT-TGLTICNKSFDKIKKKHPH 314
           + + S   V++  + + +  K++H      +P  +  QQT TG+   +     ++K   +
Sbjct: 139 VPVSSKIAVLDARLPVKQAFKIMHDEGLSLVPLWDDQQQTVTGMLTASDFVLILRKLQRN 198

Query: 315 IQTLSHERLQ 344
           I+TL HE L+
Sbjct: 199 IRTLGHEELE 208


>10_02_0005 - 4065845-4065970,4067856-4067913,4067982-4068040
          Length = 80

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 300 KKHPHIQTLSHERLQCTLQILQKFGITPLEACQN-IHIFSMN 422
           + HP+  T  H+  +   Q   +FG  PL+  Q+  H+  +N
Sbjct: 5   RTHPNSDTYQHDSQESCTQAAARFGFLPLDQMQSKWHVICIN 46


>06_01_0465 - 3304417-3306834
          Length = 805

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 347 YITNTTKIWHYTSRSLSKHSYFFNE---SDYYG 436
           Y  N T IW+  + S S H + F +   +D+YG
Sbjct: 329 YKANATLIWNNNANSKSNHGFIFKKIPHTDFYG 361


>03_02_0863 - 11889492-11889761,11890257-11890421,11890518-11890637
          Length = 184

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +3

Query: 168 NPYIYLLRTNKLLH-SRCY----HQLPFLEFYQQTTGLTICNKSFDKIKKKHPHIQTLSH 332
           NP +  L+ N   H S CY    H LPF  FY+   G  +C+ S      K        H
Sbjct: 48  NPDVLFLQVNYEEHKSMCYSLHVHVLPFFRFYRGAQG-RLCSFSCTNATIKKFRDALAKH 106

Query: 333 ERLQCTL 353
           +  +C+L
Sbjct: 107 KPDRCSL 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,508,464
Number of Sequences: 37544
Number of extensions: 178099
Number of successful extensions: 362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)