Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N09
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    30   0.22 
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.7  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   3.6  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    25   6.3  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   6.3  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           25   6.3  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   6.3  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   8.4  

>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 65  LFSFFFCRGKCIYALPLPIALVRPKSPN 148
           L S F+C    +Y LPL + L  PK+PN
Sbjct: 76  LLSLFYC-AYVMYFLPLEVGLFNPKTPN 102


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 384 FTPPPPKGGMTTAQTSGGNH 443
           + PPPP+G +   +  GG+H
Sbjct: 97  YAPPPPRGPLFGPRIGGGHH 116


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 397 GGGVKRWEGKYSSLIP 350
           GGGV+ W+G Y S+ P
Sbjct: 174 GGGVEAWKGFYQSIRP 189


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 204 RVSPTLARS---SSLRAPLPIALGDFGL 130
           R+ P LAR    S L  P+P+AL DF L
Sbjct: 34  RLLPILARQYVMSMLFNPMPVALSDFDL 61


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 315 ETTGPRSCNGPMGMREEYFPSHLFTPPPPKG 407
           ET+GP S   P   + E F   +F P  P G
Sbjct: 205 ETSGPASSVLPSSSQLESFNEFMFLPSSPPG 235


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 95  CIYALPLPIALVRPKSPNAMGKGAR-RDELRAS 190
           C+   P+P+ +VRP       K  R +D+ R S
Sbjct: 265 CLQKSPIPVIVVRPDRKRVRSKNKRLKDKTRKS 297


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 56  PYYLFSFFFCRGKCIYAL 109
           PY++F FFF   K +Y L
Sbjct: 211 PYHMFPFFFPLNKYVYLL 228


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 150 QWVRGHGGTNSVPVWDSPGRESPGNT 227
           QW  G   T  VPVW  PG E    T
Sbjct: 124 QWNSGERSTEYVPVW-LPGPEKGSET 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,950
Number of Sequences: 5004
Number of extensions: 53524
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)