Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N09
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    29   1.4  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    29   1.4  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    29   1.9  
U12966-7|AAK84534.1|  352|Caenorhabditis elegans Dumpy : shorter...    29   2.5  
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    28   4.3  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   4.3  
AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    27   5.7  
U13875-8|AAN63443.1|  633|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U13875-7|AAN63444.1|  635|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 243 PGGFSGYFRATLARVSPTLARSSSLRAPLPIALGDFG 133
           P    G++   L   +P L +S  LR P+P  LGDFG
Sbjct: 833 PPNNDGFYEFNLEEPAPILRKS--LRKPVPRILGDFG 867


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 243 PGGFSGYFRATLARVSPTLARSSSLRAPLPIALGDFG 133
           P    G++   L   +P L +S  LR P+P  LGDFG
Sbjct: 831 PPNNDGFYEFNLEEPAPILRKS--LRKPVPRILGDFG 865


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 321 TGPRSCNGPMGMREEYFPSHLFTPPPPKGGMTTAQT 428
           TG    N P+G   ++FP+H  TP PP   +T + T
Sbjct: 254 TGFHKPNEPIG---DFFPTHSSTPVPPTEAVTQSHT 286


>U12966-7|AAK84534.1|  352|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 17 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -2

Query: 323 GGFAAGGDAVACLAIPYRPHPKCGGRPRGVLVGISGRLSPG*VPHWHGVRPSVPPYP 153
           GG+   G   +  + P  PH    G P+G   G +G  +   +P   GV PSV  +P
Sbjct: 70  GGYGGYGSGPSGPSGPSGPHGGFPGGPQGHFPGNTGSSNTPTLPGVIGVPPSVTGHP 126


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +1

Query: 166 TEGRTPCQCGTHPGESRP--EIPTKTPRGRPPHLGWGR 273
           T+      CGT  G   P  ++    P  +PP  GWGR
Sbjct: 647 TQSELRRMCGTTAGSVAPVAQVRQTNPSRQPPRGGWGR 684


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
 Frame = +1

Query: 199 HPGESRPEIPTKTPR-GRPPHLGWGRYGIA----------RHATASPPAAKPPG 327
           HP  SR   PT+ PR  R PH        A           H+T +PP+  PPG
Sbjct: 100 HPHPSRRPRPTRLPRPSRSPHSDAPEPSAATDGFELVFGKHHSTGAPPSGGPPG 153


>AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical
           protein Y50E8A.5 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 178 TPCQCGTHPGESRPEIPTKTPRGRPPHLGWGRYGI 282
           TP   G+   E+ P   T+  RG   ++ W +YG+
Sbjct: 70  TPYAHGSRHAENGPVTVTRCQRGETQNMNWVKYGL 104


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = +3

Query: 309 CGETTGPRSCNGPMGMREEY------FPS-HLFTPPPPKGGMTTAQTS 431
           C E    R CNGP+    +Y      F S  LFT  PP   MTT   +
Sbjct: 847 CLEVRADRICNGPLRSASKYRVRIRLFTSPTLFTDSPPSQVMTTGSAT 894


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = +3

Query: 309 CGETTGPRSCNGPMGMREEY------FPS-HLFTPPPPKGGMTTAQTS 431
           C E    R CNGP+    +Y      F S  LFT  PP   MTT   +
Sbjct: 847 CLEVRADRICNGPLRSASKYRVRIRLFTSPTLFTDSPPSQVMTTGSAT 894


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 288 PSNPVSPPSQMRRTAPGGFSGYFRATLARVSPTLARSSSLRAPLP 154
           P +P  PP  M   +PG + G+ R       P      ++RAP+P
Sbjct: 493 PGHPGYPPQHMNAFSPGQYPGHQRPPGGPGGPP-PGPQAMRAPMP 536


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 235 TPRGRPPHLGWGRYGIARHATASPPAAKPPG 327
           T RG PP    G +G   H    PP   PPG
Sbjct: 109 TWRGAPPPAHHGHFGPPGHHFQGPPQHFPPG 139


>U13875-8|AAN63443.1|  633|Caenorhabditis elegans Hypothetical
           protein C26E6.7a protein.
          Length = 633

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 113 LPIALVRPK-SPNAMGKGARRDELRASVGLTRARVARKYPLKPPGAV 250
           L I+  +P+  P  +   AR  ELRA     + R+ RK+  KP G V
Sbjct: 104 LRISETKPEYPPELLQLEARLQELRAGRKNKQGRINRKFVAKPCGVV 150


>U13875-7|AAN63444.1|  635|Caenorhabditis elegans Hypothetical
           protein C26E6.7b protein.
          Length = 635

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 113 LPIALVRPK-SPNAMGKGARRDELRASVGLTRARVARKYPLKPPGAV 250
           L I+  +P+  P  +   AR  ELRA     + R+ RK+  KP G V
Sbjct: 104 LRISETKPEYPPELLQLEARLQELRAGRKNKQGRINRKFVAKPCGVV 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,432
Number of Sequences: 27780
Number of extensions: 364322
Number of successful extensions: 938
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)