Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N09
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.4  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 250 PPHLGWGRYG 279
           PP  GWG YG
Sbjct: 32  PPLFGWGSYG 41


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 291 MPSNPVSPPSQMRRTAPGGFSGYFRATLARVSPTLARSS 175
           MPS P+ P      T P  F      TL  +  TL ++S
Sbjct: 648 MPSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTLTKNS 686



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 278 PYRPHP 261
           PYRPHP
Sbjct: 108 PYRPHP 113


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 424 KHPGAIIHTTYIIDSISSFSMSL 492
           +H G I+H TY+I +++   ++L
Sbjct: 250 RHYG-ILHATYVIPAVTMMLLTL 271


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 202 PGESRPEIPTKTPRGRP 252
           PG   PE+  K P G+P
Sbjct: 76  PGYLSPEVLKKEPYGKP 92


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 106  TTLTHCISETEVP 144
            TT+T+C +E +VP
Sbjct: 1202 TTVTYCQTEEDVP 1214


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 106  TTLTHCISETEVP 144
            TT+T+C +E +VP
Sbjct: 1198 TTVTYCQTEEDVP 1210


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -1

Query: 447 MDDCPRMFEQWS 412
           + +CP +FE W+
Sbjct: 153 VQECPLIFESWT 164


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 278 PYRPHP 261
           PYRPHP
Sbjct: 108 PYRPHP 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,650
Number of Sequences: 438
Number of extensions: 4866
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)