Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N04
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    25   3.5  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    24   4.6  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    24   4.6  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    24   4.6  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    23   8.1  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    23   8.1  

>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 89  LGRPT*SYETRLEFWRYENNRNICVWWRSR 178
           LG+P   Y  +L  + Y+N   I +W  SR
Sbjct: 2   LGKPALQYFGKLSRYLYKNGEPINIWVYSR 31


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 125 EFWRYENNRNICVWW 169
           E W+   N NIC+ W
Sbjct: 496 EIWKMNQNGNICIDW 510


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 90  WVVPLEVMKPALSSG-DMKITATSVCGGEVVARACVVKDLSEIDQLQQGDVLITHATDIG 266
           W    E++  A S G ++ + +      E++ R  +    SE+DQL +   L+ + T   
Sbjct: 238 WYRAPELLLGAPSYGKEIDMWSIGCIFAEMITRTPLFSGKSELDQLYKIFNLLGYPTREE 297

Query: 267 WSPYF 281
           W  YF
Sbjct: 298 WPQYF 302


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 15  LKKAIQRQQYYPKWAKLKFAEINKGWVV 98
           LKKA Q     PKW K  + +  K  V+
Sbjct: 456 LKKATQEVPVVPKWYKKAYCKTEKRAVI 483


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 99  PLEVMKPALSSGDMKITATSVCGGEVVARA 188
           PLE + P  S+GD  +       G + ARA
Sbjct: 860 PLEKITPEKSTGDPTLDRVRAAVGGIAARA 889


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 149 GYFHIARTQGGFHNFKWDDPTFVYFGKF 66
           GYF      G  H  K D PT    GK+
Sbjct: 151 GYFRPLLMDGAVHATKLDLPTLHLLGKY 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,178
Number of Sequences: 5004
Number of extensions: 21290
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)