Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N04
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0639 + 23055223-23055678,23055788-23056627                       28   1.3  
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484     27   3.1  
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    27   4.1  
01_01_0559 - 4109690-4111003                                           26   5.4  
09_03_0127 + 12573429-12574857,12575269-12575903                       26   7.2  
06_01_0868 - 6606913-6607000,6607516-6608010,6610313-6610761,661...    26   7.2  
11_06_0512 - 24460391-24462337                                         25   9.5  
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954...    25   9.5  

>06_03_0639 + 23055223-23055678,23055788-23056627
          Length = 431

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 54  WAKLKFAEINKGWVVPLEVM 113
           W++L FAE++ GW  P+ V+
Sbjct: 366 WSRLGFAEVDYGWGAPVHVV 385


>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
          Length = 519

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 96  RPNLCLFRQILIWPILDNTVGVE*LFLTKP 7
           +PN+CL    ++W +L +  G+    LT P
Sbjct: 105 QPNICLADVSMVWQVLSDRTGIYPKNLTNP 134


>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 63  LKFAEINKGWVVPLEVMKPALSSGDMKITATSVCGGEV 176
           LK + +N  W +P ++     S  ++++    V GGE+
Sbjct: 211 LKLSNVNLDWKIPRQLSSRCTSLTELELNNCPVNGGEI 248


>01_01_0559 - 4109690-4111003
          Length = 437

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 54  WAKLKFAEINKGWVVPLEVM 113
           W +L FAE++ GW  P  V+
Sbjct: 372 WTRLGFAEVDYGWGPPAHVV 391


>09_03_0127 + 12573429-12574857,12575269-12575903
          Length = 687

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 35  PTVLSKMGQIKICRNKQRLGRPT*SYE-TRLEFWRYENN 148
           P  LSK+G ++ C N  R       +E +R E +   NN
Sbjct: 180 PAELSKLGLVRFCVNDNRFNGAIPEFELSRFEHFSVANN 218


>06_01_0868 -
           6606913-6607000,6607516-6608010,6610313-6610761,
           6610863-6610979,6611892-6612863
          Length = 706

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 168 GEVVARACVVKDLSEIDQLQQGDVLITHATDIGWSPYFPXA 290
           GE+ ARA  V+DL   DQ       ITHA D+     +P A
Sbjct: 629 GEISARAVRVEDLYRSDQ------RITHAVDLPLHAPYPTA 663


>11_06_0512 - 24460391-24462337
          Length = 648

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 185 SSNDFSTTHRCC 150
           S+NDFS THR C
Sbjct: 276 SNNDFSRTHRAC 287


>05_03_0460 -
           14294931-14295110,14295200-14295234,14295358-14295457,
           14295548-14295669,14296272-14296367,14296489-14298949
          Length = 997

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +3

Query: 162 CGGEVVARACVVKDLSEIDQLQQGDVLITHATDIGWSP 275
           C G+++    ++ +L  +D+L++G  +     D+G +P
Sbjct: 471 CKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTP 508


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,147,322
Number of Sequences: 37544
Number of extensions: 141434
Number of successful extensions: 324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)