Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N03
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   8.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.5  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 128  CILHLMVL*YGS*QYEHYWQILIYIFYTTSSEFIT*ALYIY 250
            C L  ++L +GS  Y+   ++++Y FY   + ++T   Y +
Sbjct: 946  CYLKKLLLVHGSWCYQRLSKLILYSFYKNIALYMTQFWYAF 986


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 190 FNLYFLYNIVGIYYISSIHIYNFI 261
           F LYF+Y  +G++  S I+   FI
Sbjct: 142 FCLYFIYIAIGVFGCSYIYTVTFI 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,126
Number of Sequences: 5004
Number of extensions: 44339
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)