Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N03
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    31   0.84 
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    28   4.5  
AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical ...    28   5.9  

>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 587  LIQFICINFLDHNISIQSMYW--VTYHQFYFNTIYSKKIMNKKIIVSYFIFN 438
            L+  I ++F  H     S+YW  ++  + Y   +  + I+ ++ IVSY +FN
Sbjct: 1379 LVNAIALDFKYHQNGSVSIYWTDLSADKIYTGLVDQRTILYQRTIVSYGVFN 1430


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 176 HYWQILIYIFYTTSSEFIT*ALYIYITL*RQTEGVTSHGVSL 301
           H+W    +IF TTS+E  T   +I +T  +Q   +T+   +L
Sbjct: 197 HFWACF-FIFSTTSTEVFTFVCFICMTFSQQNRRITTSSRTL 237


>AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical
           protein Y32B12B.6 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 141 SWYYNTVVDSMNIIGRF*FIF--SIQHRRNLLHKLYTYI*LYNAKQR 275
           SWYY T+V ++  + +F F++   +Q R  ++ + +  + L++A  R
Sbjct: 145 SWYYITLVSTVYFMKQFPFVYFARLQDRIAIIRETFLKVALFSASFR 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,177,329
Number of Sequences: 27780
Number of extensions: 234747
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)