Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_N01
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 29 0.69
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 28 1.2
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 26 4.9
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 4.9
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 25 6.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 6.4
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 8.5
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 8.5
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 25 8.5
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 8.5
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 435 DLAIEHNQLTTLKTDGGRIISSRPELLREVENFYGQLYTSTQKPNDPSGRST 280
DL L ++++ G ++ + +F+G L+TST +P+ ST
Sbjct: 609 DLPPAEQLLQQIESEVGEESEDGTPVMTRLRSFFGSLFTSTNSETEPAEEST 660
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 363 ELLREVENFYGQLYTSTQKPNDPSGRSTRHFTEDIPDFSLYEIRTAL 223
+LLR+ + TST ND S S+ D PDF + + +L
Sbjct: 583 DLLRKTLAYTNSSGTSTVLSNDSSAISSTFLDRDFPDFGITSLAGSL 629
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Frame = -3
Query: 426 IEHNQ---LTTLKTD--GGRIISSRPELLREVEN 340
I+HNQ TT + D G R+ SS+P+++ E+EN
Sbjct: 56 IKHNQDVENTTFQLDLRGCRVPSSQPQVITELEN 89
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -3
Query: 384 RIISSRPELLREVENFYGQL--YTSTQKPNDPSGRSTRHFTEDIP 256
R S RPE R+ N T KPND G F +D+P
Sbjct: 102 RYNSHRPERRRKTNNDRRNYPPQNRTAKPNDNDGDDYSFFEDDLP 146
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 6.4
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Frame = +1
Query: 88 VCHRRGL*RFSFEYGGIKELLKELEDQFSPRLHVITRH---LIVFELFESR-----SNFI 243
+C R L +F+ ++LL EL QF+ +T+ VFE F R ++ +
Sbjct: 22 LCERENLRIAAFDLFENEKLLHELHGQFTMYTGDLTKQGDIERVFEEFHPRVVIHTASPV 81
Query: 244 QTEVRDIFSKVSC*STAGVVRLLCRCV*LSVEILDFPQKLG 366
RDI+ +V+ TA +++ C +V+ L + G
Sbjct: 82 HNLARDIYFEVNVDGTANIIK---ACQKFNVDALVYTSSAG 119
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 559 NTLFTRSRTDTRMFYYLYLPNDQQRIYDF-FESG 461
NTLF+ S + + +YL L ND I F++G
Sbjct: 405 NTLFSNSELNLFLLHYLSLDNDLSNILKVDFQNG 438
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 85 FQLIGWMDGRNLLVTPLS 32
F LI +DG +LLVTPLS
Sbjct: 386 FGLIPVIDGSSLLVTPLS 403
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 468 NQGKNFG*LSRDLAIEHNQLTTLKTDG 388
++G N +S DL +E+ +TTL++DG
Sbjct: 373 DRGPNPFMISLDLYVENEYITTLQSDG 399
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 8.5
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -3
Query: 456 NFG*LSRDLAIEHNQLTT--LKTDGGRIISSRPELLREVENFYGQLYTSTQKP--NDPSG 289
NFG D + H+ LT L+ + +++ L +++ + Q + NDP
Sbjct: 506 NFGARDEDWKVYHDVLTAEQLEEERKKLLDQIYSLEKQLLEYDSQFTQANTYDTLNDPRA 565
Query: 288 RSTRHFTEDIPDFSLYEIRTALKQFKN 208
FT + DF + ++ A + N
Sbjct: 566 TLLYAFTRGVSDFDVNDVAQAFQLHLN 592
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -2
Query: 124 RRKNAIGHAYDRRFQLIGWMDGRNLLVT---PLSSTFEINYF 8
R G D +Q++ M+ LL T LSS FE+NY+
Sbjct: 508 REIQMFGLINDINYQILSNMNNLVLLATIPVSLSSVFEVNYY 549
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 341 ISTDSYTHRHKSLTTPAVDQHDTLLKISRTSVCMKFERLSNSSK 210
I D Y HR +S+++P +D + I+ T+V K + L K
Sbjct: 177 IKEDDYMHRGRSISSPMID----VEHINSTAVPSKTKNLPEKPK 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,776
Number of Sequences: 5004
Number of extensions: 53169
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -