Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N01
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0682 - 35516081-35518303                                         30   1.2  
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325...    29   2.1  
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324...    29   2.1  
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621...    28   5.0  
07_01_0249 - 1844894-1845363,1845557-1848158                           27   8.7  

>03_06_0682 - 35516081-35518303
          Length = 740

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -2

Query: 358 SEGSREFLRTAIHIDTKA*RPQR*INTTLY*RYPGLQSV*NSNGSQTVQ 212
           S GS +F  +A H+     RP+  +N++L   YPG+Q++  S+ ++ +Q
Sbjct: 524 SIGSEDFPYSARHLFLSGDRPEVILNSSLEKGYPGIQTLIYSSQNEDLQ 572


>01_01_0429 +
           3254291-3254435,3254902-3255210,3255286-3256747,
           3256950-3257577
          Length = 847

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 285 STRHFTEDIPDFSLYEIRTALKQFKNNKVPGD 190
           S  HF+  +P+F +Y    +   F NNK+ G+
Sbjct: 240 SNNHFSSIVPNFGIYLENASYINFSNNKLSGN 271


>01_01_0426 +
           3234987-3235935,3236744-3236782,3237044-3237409,
           3240871-3242315
          Length = 932

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 285 STRHFTEDIPDFSLYEIRTALKQFKNNKVPGD 190
           S  HF+  +P+F +Y    +   F NNK+ G+
Sbjct: 668 SNNHFSSIVPNFGIYLENASYINFSNNKLSGN 699


>04_04_1032 -
           30259180-30260519,30260650-30260720,30261099-30262118,
           30263886-30264121
          Length = 888

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
 Frame = -3

Query: 432 LAIEHNQLTT-LKTDGGRI--ISSRP--ELLREVENFYGQLYT--STQKPNDPSGRSTRH 274
           L +E  QL +  +  G R   ISS P  ++ RE +N   + Y+  +TQKP  P G S   
Sbjct: 130 LELERKQLASKYQNQGFRSDDISSVPFADMRREFDNSSTEYYSRNNTQKPQFPLGNSASQ 189

Query: 273 FTEDIPDFSLYEIRTALKQFKNNKVPGDDMKARGK 169
             +D+         T  K  K+ K  GD     GK
Sbjct: 190 QCKDLSS-------TRYKSKKSKKRKGDSSNLPGK 217


>07_01_0249 - 1844894-1845363,1845557-1848158
          Length = 1023

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 306 AFVSMCIAVRRNSRLPSEARVWRI*SYRR 392
           AF +M I   R+ +  SEAR W++ +++R
Sbjct: 655 AFAAMAILKARSLKKASEARAWKLTAFQR 683


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,673,387
Number of Sequences: 37544
Number of extensions: 325299
Number of successful extensions: 771
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)