Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_N01
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    48   4e-06
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    44   6e-05
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    44   6e-05
U23452-11|AAK31548.1|  334|Caenorhabditis elegans Hypothetical p...    30   1.5  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    29   2.6  
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       28   4.5  
Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
 Frame = -3

Query: 444 LSRDLAIEHNQLTTLKTDG-GRIISSRPELLREVENFYGQLYTSTQKPNDPSGRSTRHF- 271
           ++RDL    + + +LK    G  I+SR ++ RE+E FY  L+ S + P  P   +     
Sbjct: 330 VARDLNEYKSFIPSLKCSSTGERITSREKMEREIEMFYTSLFRSRKTPPPPQLPTPPPIM 389

Query: 270 TEDIPDFSLYEIRTALKQFKNNKVPGDD------MKARGKLILEFFQKLFNSAILEG 118
            E +P F   EIR A+  F N K  G D      +K+ G  ++      FN  +  G
Sbjct: 390 AEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLESG 446


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = -3

Query: 471 SNQGKNFG*LSRDLAIEHNQLTTLK-TDGGRIISSRPELLREVENFYGQLYTSTQKPNDP 295
           +NQ K+   ++RD+    + +  LK T  G  I+SR ++ +E+E FY + + S    +  
Sbjct: 305 ANQKKSLKRVARDINEYKSVIPCLKSTSTGERITSRVKMEQEIEKFYTEFFKSAVSNSQA 364

Query: 294 SGRSTRHFTEDIPDFSLYEIRTALKQFKNNKVPGDD 187
           S   T   T   P F   +IR AL+ F N K  G D
Sbjct: 365 SSIPT---TATPPPFLPEKIRYALRSFPNGKAAGQD 397


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
 Frame = -3

Query: 471 SNQGKNFG*LSRDLAIEHNQLTTLK-TDGGRIISSRPELLREVENFYGQLYTSTQKPNDP 295
           +NQ K+   ++RD+    + +  LK T  G  I+SR ++ +E+E FY +L+ S    +  
Sbjct: 476 ANQKKSLKRVARDINEYKSVIPCLKSTSTGERITSRVKMEQEIEKFYTELFKSAVSNSQT 535

Query: 294 SGRSTRHFTEDIPDFSLYEIRTALKQFKNNKVPGDD 187
           S       T   P F   EIR  L+ F N K  G D
Sbjct: 536 SSIPA---TATPPPFLPEEIRHVLRSFPNGKAAGQD 568


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
 Frame = -3

Query: 471 SNQGKNFG*LSRDLAIEHNQLTTLK-TDGGRIISSRPELLREVENFYGQLYTSTQKPNDP 295
           +NQ K+   ++RD+    + +  LK T  G  I+SR ++ +E+E FY +L+ S    +  
Sbjct: 215 ANQKKSLKRVARDINEYKSVIPCLKSTSTGERITSRVKMEQEIEKFYTELFKSAVSNSQT 274

Query: 294 SGRSTRHFTEDIPDFSLYEIRTALKQFKNNKVPGDD 187
           S       T   P F   EIR  L+ F N K  G D
Sbjct: 275 SSIPA---TATPPPFLPEEIRHVLRSFPNGKAAGQD 307


>U23452-11|AAK31548.1|  334|Caenorhabditis elegans Hypothetical
           protein R07G3.8 protein.
          Length = 334

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 332 DSYTHRHKSLT-TPAVDQHDTLLKISRTSVCMK--FERLSNSSKTIRCRVMT 186
           DSY   H+SL      D   T++ + R  +       RL++SSK + CRVMT
Sbjct: 214 DSYMQTHQSLPINNTTDVFVTIINVCRFMLANDECLARLTDSSKHLCCRVMT 265


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 297  PSGRSTRHFTEDIPDFSLYEIRTALKQFKNNKVPGDDMKAR 175
            P+ RS+ H   D+  F+ YE+    +      +P D +KAR
Sbjct: 1210 PALRSSEHTVTDLRPFTSYEVNVFSENGFGRSLPTDSVKAR 1250


>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
           protein T10G3.5b protein.
          Length = 1203

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 417 NQLTTLKTDGGRIISSRPELLREVENFYGQLYTSTQKPNDPSGRSTRHFTE 265
           +QL  LKT+  R+I S  E  +E+E     +  +TQ+ ++ +  S    TE
Sbjct: 783 SQLEELKTEVERLIRSEEEKTQEIEKLKSAVTATTQERDELTATSESLRTE 833


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
           protein T10G3.5a protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 417 NQLTTLKTDGGRIISSRPELLREVENFYGQLYTSTQKPNDPSGRSTRHFTE 265
           +QL  LKT+  R+I S  E  +E+E     +  +TQ+ ++ +  S    TE
Sbjct: 785 SQLEELKTEVERLIRSEEEKTQEIEKLKSAVTATTQERDELTATSESLRTE 835


>Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical
           protein R04B5.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 522 CFTIYIYLMTNRGSTIFSNQGKNFG*LSRD-LAIEHNQLTTLKTDGGRII 376
           CF  + +L T++ S +FSN   NF  L R  L  +HN L       G  I
Sbjct: 192 CFNEFEFLPTDQKSILFSNFSVNFIVLERAFLTSKHNNLNQWVLQSGDYI 241


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 417 NQLTTLKTDGGRIISSRPELLREVENFYGQLYTSTQKPNDPSGRSTRHFTE 265
           +QL  LKT+  R+I S  E  +E+E     +  +TQ+ ++ +  S    TE
Sbjct: 785 SQLEELKTEVERLIRSEEEKTQEIEKLKSAVTATTQERDELTATSESLRTE 835


>Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.2 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 158 SRISFPLAFMSSPGTLLFLNCLRAVRISY 244
           S+   P+ FM  P TL+++ CL  +  S+
Sbjct: 270 SQTGIPILFMQFPMTLIYITCLANISTSF 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,925
Number of Sequences: 27780
Number of extensions: 285561
Number of successful extensions: 811
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)