Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M22
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    36   0.006
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    33   0.032
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    33   0.043
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   3.7  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.9  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   6.5  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
 Frame = -3

Query: 566 FSRDCPNCPADCRYWLYSRDCPNCPVCSNCSEFPECPNLPDC*SLISWDCPNCP-LCPNS 390
           + R+C     DC  W   R C N   C +  E P   N+          C  C  + P +
Sbjct: 145 YMRNCKVQCFDCHEWYTCRHCHN-DACDHVLERPAVENML---------CMICSKVQPAA 194

Query: 389 *YCPFSRDCPNCPVCSNCSEFPECPNLPDC*SLISWDCPNCPLC 258
            YC + ++C     C+ C  + + PN        S+ C +C +C
Sbjct: 195 QYCKYCKNCMGRYYCNKCKLWDDDPNKS------SYHCDDCGIC 232


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 33.1 bits (72), Expect = 0.032
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
 Frame = -3

Query: 488 CSNCSEFPECPNLPDC*SLISWDCPN--------CPLC 399
           CS C EF  CP   +C  +  W C N        CPLC
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLC 293



 Score = 33.1 bits (72), Expect = 0.032
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
 Frame = -3

Query: 347 CSNCSEFPECPNLPDC*SLISWDCPN--------CPLC 258
           CS C EF  CP   +C  +  W C N        CPLC
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLC 293



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 269 CPLCPNS*YCPFSRDCSN*VCSDC*Y-WLGSR-DCPNC 162
           C LC    +CP + +C +  C  C   W   + +CP C
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLC 293


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 269 CPLCPNS*YCPFSRDCSN*VCSDC*Y-WL-GSRDCPNC 162
           CP+C  +   PF+  C +  C +C   WL  S+ CP C
Sbjct: 85  CPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTC 122


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
 Frame = -3

Query: 596 QDCPNS*YCPFSRD-CPNCPAD-CRYWLYSRDCPNCPVCSNCSEF 468
           QD     +C    D C  C    C +   S    N P CSNC  F
Sbjct: 67  QDDQKQIFCKLCVDICNGCSTPICEFNAVSNSQANHPCCSNCRAF 111


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 269 CPLCPNS*YCPFSRDCSN*VCSDC*YWLGSRDCPNCPV 156
           C +C N  Y P    CS+  C  C   L  +    CP+
Sbjct: 360 CAICSNVAYKPVRLGCSHVFCLHCLIILQKQKVDFCPL 397


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 583 TLDIVLFLGIVRTVQRIVDIGC 518
           TLDI + L +VR +  I+  GC
Sbjct: 499 TLDIKIKLNLVRLISAIISCGC 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,784
Number of Sequences: 5004
Number of extensions: 39147
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)