Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_M22
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 36 0.033
04_04_0302 - 24255456-24255935,24256723-24257604 34 0.076
02_04_0413 + 22681957-22682035,22682253-22682788 33 0.18
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 30 1.6
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 29 2.9
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 29 3.8
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 29 3.8
07_01_0422 + 3220988-3221536 28 6.6
05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713 27 8.7
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 27 8.7
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 35.5 bits (78), Expect = 0.033
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Frame = -3
Query: 554 CPNCPADCRYWLYSRDCPNCPVCSNCSEFPECPNLPDC*SLISWDCPNCPLCPN-S*YCP 378
C NC R ++RDCPN +C C LP I+ +C + LC N
Sbjct: 41 CNNCK---RPGHFARDCPNVALCHAC-------GLP---GHIAAECSSKDLCWNCKEPGH 87
Query: 377 FSRDCPNCPVCSNCSEFPECPNLPDC*SLISWDCPNCPLCPNS*YCPFSRDCSN-*VCSD 201
+ CPN +C NC + ++ + C C + + +C+N C++
Sbjct: 88 MANSCPNEGICRNCGKSGHIARECSAPPMLPGEMRLCSNCYKPGH--LAAECTNEKACNN 145
Query: 200 C*YWLG--SRDCPNCPV 156
C G +R+CPN PV
Sbjct: 146 C-RKSGHLARNCPNEPV 161
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Frame = -3
Query: 515 SRDCPNCPVCSNCSEFP----EC---PNLPD----C*SL-----ISWDCPNCPLCPNS*Y 384
+ CPN +C NC + EC P LP C + ++ +C N C N
Sbjct: 89 ANSCPNEGICRNCGKSGHIARECSAPPMLPGEMRLCSNCYKPGHLAAECTNEKACNNCRK 148
Query: 383 CP-FSRDCPNCPVCSNCS 333
+R+CPN PVC+ C+
Sbjct: 149 SGHLARNCPNEPVCNLCN 166
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 572 CPFSRDCPNCPADCRYWLYSRDCPNCPVCSNCS 474
C + C NC +R+CPN PVC+ C+
Sbjct: 137 CTNEKACNNCRKSGHL---ARNCPNEPVCNLCN 166
>04_04_0302 - 24255456-24255935,24256723-24257604
Length = 453
Score = 34.3 bits (75), Expect = 0.076
Identities = 24/84 (28%), Positives = 32/84 (38%)
Frame = -3
Query: 518 YSRDCPNCPVCSNCSEFPECPNLPDC*SLISWDCPNCPLCPNS*YCPFSRDCPNCPVCSN 339
Y+ D CP+C N +CP+ C S +C C +C C C C +
Sbjct: 375 YALDIEMCPICQNYKLVYDCPD-EGCDDRRSGNCKGCTVC--------ILRCYECGRCVD 425
Query: 338 CSEFPECPNLPDC*SLISWDCPNC 267
F E +L W CPNC
Sbjct: 426 KLAFKESFSL-------DWVCPNC 442
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 33.1 bits (72), Expect = 0.18
Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 1/106 (0%)
Frame = -3
Query: 515 SRDCPNCPVCSNCSEFPE-CPNLPDC*SLISWDCPNCPLCPNS*YCPFSRDCPNCPVCSN 339
S C CP + P C + P C S C C + C + CP P C N
Sbjct: 83 SEQCAECPRPPHPPPSPSPCVHPPCCESAAGCCCNGC----SGGGCGGGQ-CPPSPSCEN 137
Query: 338 CSEFPECPNLPDC*SLISWDCPNCPLCPNS*YCPFSRDCSN*VCSD 201
P C C +CP P P CP + C + CS+
Sbjct: 138 --HHPPCKPGCCCCGCSGGECPPPPSPPCQHECPPTPPCEHPPCSE 181
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 422 DCPNCPLCPNS*YCPFSRDCPN-CPVCSNCSEFPE--CP 315
D CP+C NS P + CPN +CSNC E CP
Sbjct: 56 DLLECPVCTNSMRPPILQ-CPNGHTICSNCKHRVENHCP 93
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 497 CPVCSNCSEFPECPNLPDC*SLISWDCP 414
CP+C FP +L + L+S+ CP
Sbjct: 244 CPLCRQAGVFPNAVHLDELNMLLSYSCP 271
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 356 CPVCSNCSEFPECPNLPDC*SLISWDCP 273
CP+C FP +L + L+S+ CP
Sbjct: 244 CPLCRQAGVFPNAVHLDELNMLLSYSCP 271
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -3
Query: 269 CPLCPNS*YCPFSRDCSN*VCSDC*Y-WL-GSRDCPNC 162
CP+C N P + +C + C C WL + CP C
Sbjct: 319 CPVCLNKLDKPSTTNCGHIFCEKCIQAWLKAQKKCPTC 356
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 269 CPLCPNS*YCPFSRDCSN--*VCSDC*YWLGSRDCPNC 162
CP+C NS Y P C N +CS C + +R CP C
Sbjct: 86 CPVCTNSMYPPI-HQCQNGHTLCSTCKARVHNR-CPTC 121
>07_01_0422 + 3220988-3221536
Length = 182
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -3
Query: 497 CPVC-SNCSEFPECPNLPDC*SLISWDCPNCPLCPNS*YCPFSRDCPNCPVC 345
CPVC N + LPDC L +C + P+ R P CPVC
Sbjct: 116 CPVCLENYGDGDVLRALPDCGHLFHRECVD----------PWLRQRPTCPVC 157
>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
Length = 246
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 466 GNSEQFEQTGQFGQSREYNQYLQSAGQFGQSLEKGQY 576
G S F+ T G++ N QFGQ+ E GQ+
Sbjct: 210 GQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = -3
Query: 503 PNCPVC-SNCSEFPECPNLPDC*SLISWDCPNCPLCPNS*YCPFSRDCPNCPVCSNCSEF 327
P CPVC S P + C + C L P S S CP+CS C F
Sbjct: 15 PECPVCLSPFDAASAAPRVLPCGHSLCGPCI-ASLPPASASASASAASLRCPLCSQCVPF 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,775,721
Number of Sequences: 37544
Number of extensions: 250160
Number of successful extensions: 753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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