Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M20
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   4.5  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   5.9  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   5.9  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   7.8  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 189 YFLVEDIRIDCIQEKKKLFNIFCYNLISHSICFLLLYLYVFTMSLYNLVSIFI 347
           YFL  D  +   +E+K L  I C +L S    F     Y   +S  N+  IF+
Sbjct: 67  YFLFSDRVLQLQKERKVLVLIHCESLQSFDSFFAQKLKYADLISSDNVHEIFL 119


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 465 DNIYEYIDIILQK 427
           DN YEY+D+ L+K
Sbjct: 31  DNTYEYVDVFLEK 43


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 102 NLLERF*MIDLSSSFNHSTIETHSIYSVLYFLVEDIRIDCIQEKKKLFNI 251
           N+LE+  ++   SS+ H      SIY +L+F + +     ++  + L NI
Sbjct: 118 NVLEKLLLLQDYSSWTHGNSCKTSIYILLFFALSNTEKTRVRSLQILANI 167


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 233 FFLNTIYTYIFNKKIKYRVY*MSFNST 153
           + L   YTY+FN K+ Y+    ++ +T
Sbjct: 8   YLLRIRYTYVFNLKVSYQSERRTYGAT 34


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 132 LSSSFNHSTIETH--SIYSVLYFLVEDIRIDCIQEKKK 239
           LSS  ++ST + +   +   L+F+ E++R+D + + +K
Sbjct: 451 LSSHLDYSTFKNYLMPLAITLHFISEELRLDSVVKPRK 488


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 337 VYLSKERGEYGLLNFG 384
           ++L +ERG YG   FG
Sbjct: 81  IFLDRERGSYGFKEFG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,550
Number of Sequences: 5004
Number of extensions: 33039
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)