Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M20
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0270 - 19598062-19598694,19598797-19599154,19599247-195994...    31   0.63 
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939...    29   2.5  
11_06_0477 + 24057677-24059099,24059556-24060448,24060456-240605...    28   3.3  
11_04_0463 - 17980031-17980189,17980269-17980536,17980620-179807...    27   5.8  
01_01_0934 + 7374381-7374652,7375339-7375864                           27   5.8  

>05_04_0270 -
           19598062-19598694,19598797-19599154,19599247-19599491,
           19599869-19599877,19599909-19599977,19600043-19600552
          Length = 607

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +3

Query: 87  KTSLSNLLERF*MIDLSSSFNHSTIETHSIYS-VLYFLVEDIRIDCIQEKKKLFNIFCYN 263
           K +L+ +L+RF ++     F    +E+HS  S VL FL   IR +   +    F +F  N
Sbjct: 494 KVALAMILQRFALVVSRPMFMRQCMESHSNPSTVLKFL--PIRFETSMDLCVDFWVFAVN 551

Query: 264 LISHSICFLLLYLYV 308
           +++ +    +LY++V
Sbjct: 552 MVNAADVHRVLYIFV 566


>04_04_1427 +
           33491847-33491888,33493504-33493623,33493740-33493976,
           33494754-33495638,33495733-33495837,33495920-33496064,
           33496146-33496310,33496391-33496629,33496724-33496756,
           33496840-33496921,33497017-33497177,33497282-33497455,
           33497549-33497731,33497832-33498019,33498155-33498251
          Length = 951

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 285 FLLLYLYVFTMSLY-NLVSIFIKGAG*IWSFKFWDHEYVDNFLLITFKFFVK 437
           F+L  L    +++Y N     IKG G  W+   W +  V  F L  FKFF++
Sbjct: 791 FMLAQLVATFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIR 842


>11_06_0477 +
           24057677-24059099,24059556-24060448,24060456-24060578,
           24060995-24061036
          Length = 826

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 415 ISKKLSTYSWSQNLKDHI---HPAPLINILTRLYNDIVNTY 302
           +SK L+  +WS   K  I   +   + +IL R YND+ N Y
Sbjct: 386 LSKNLNIQAWSDIFKSRISTKNGQMMRDILARSYNDLPNNY 426


>11_04_0463 -
           17980031-17980189,17980269-17980536,17980620-17980758,
           17981498-17981588
          Length = 218

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 144 KNLKDRSFKTVPVNCSDLFYIPLIFCYY*ILRF 46
           K+LKD+  K  P N SDL + P ++  Y  + F
Sbjct: 64  KHLKDKLKKNPPANYSDLLWEPSLWTTYVKIHF 96


>01_01_0934 + 7374381-7374652,7375339-7375864
          Length = 265

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
 Frame = -1

Query: 436 FTKNLK-VISKKLSTYS-WSQNLKDHIHPAPLINIL---TRLYNDI 314
           FT + K V+ + +ST S + +N  +H+HPA L+  L   T+++ DI
Sbjct: 140 FTPHAKQVVQEFMSTCSTYQRNKTEHLHPAGLLQSLSVPTQVWEDI 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,267,684
Number of Sequences: 37544
Number of extensions: 151206
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)