Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_M19
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 83 4e-17
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 81 2e-16
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 63 3e-11
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 43 4e-05
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 33 0.023
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 31 0.094
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 3.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 3.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 3.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 3.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.5
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 4.7
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 8.2
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 82.6 bits (195), Expect = 4e-17
Identities = 39/92 (42%), Positives = 55/92 (59%)
Frame = +3
Query: 96 FIKEAILKDKVVVFSKSYCPYCKLAKDVFQKVKQPIKVIELDERDDGNIIQDNLSQITGF 275
F+++AI + V VFSKS+CP+CK AK+ K P K ELD+ ++G+ IQ L + T
Sbjct: 8 FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67
Query: 276 RTVPQVFINGNCVGGGSDVKDLYQSGKLEPML 371
TVP +F +GG SD+ L SG L M+
Sbjct: 68 STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 80.6 bits (190), Expect = 2e-16
Identities = 37/94 (39%), Positives = 59/94 (62%)
Frame = +3
Query: 87 IQQFIKEAILKDKVVVFSKSYCPYCKLAKDVFQKVKQPIKVIELDERDDGNIIQDNLSQI 266
++ F+ A+ + VVVF+KSYCPYC + V K +V ++D ++G+ IQ L +
Sbjct: 4 VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63
Query: 267 TGFRTVPQVFINGNCVGGGSDVKDLYQSGKLEPM 368
TG RTVP +FI+ VGG SD + L++ G+L+ +
Sbjct: 64 TGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Frame = +3
Query: 105 EAILKDKVVVFSKSYCPYCKLAKDVFQ---KVKQPIKVIELDERDDGNIIQDNLSQITGF 275
E L++ V++FS+ CPY AK + ++ P V+E+ + + ++D LS I+
Sbjct: 61 EVFLENPVIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDI 120
Query: 276 RTVPQVFINGNCVGGGSDVKDLYQSGKLEPML 371
T+P +F+ G+ +GG V+ LYQ KL+ L
Sbjct: 121 STMPNIFVGGHSIGGSDSVRALYQEEKLQSTL 152
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/105 (23%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +3
Query: 78 SEEIQQFIKEAILKDKVVVFSKSYC--PYCKLAKDVFQKVKQPIKVIELDERDDGNII-- 245
S + +Q +++A+ +D +V+F K P C + Q + ++ + D+ N++
Sbjct: 22 STQTRQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILS--LENVASDKLVTYNVLSN 79
Query: 246 ---QDNLSQITGFRTVPQVFINGNCVGGGSDVKDLYQSGKLEPML 371
++ + + + + T+PQ++ING VGG + +++SG+L +L
Sbjct: 80 DELREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.5 bits (73), Expect = 0.023
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +3
Query: 243 IQDNLSQITGFRTVPQVFINGNCVGGGSDVKDLYQSGKLEPML 371
++ L + + T PQ++I G VGG V ++ ++G+L+ ML
Sbjct: 200 VRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 31.5 bits (68), Expect = 0.094
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +3
Query: 75 NSEEIQQFIKEAILKDKVVVFSKSYCPYCKLAKDVFQKVKQ------PIKVIELDERDDG 236
NS+ ++F+K +VVF +C YCK +QK+ P+ ++ D D
Sbjct: 37 NSKNFRKFVKAK--GPSLVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDA--DQ 92
Query: 237 NIIQDNLSQITGFRTVPQVF 296
N + Q+ GF T+ V+
Sbjct: 93 NRAVCSQYQVQGFPTIKLVY 112
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 120 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 212
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 340 KSLTSEPPPTQLPLMNT*GTVLKPVICDRLS*IMFPSS 227
++LT+ PP Q+PLM V V+ RLS + P S
Sbjct: 276 RTLTTASPPEQIPLMEPQVYVNPQVLPGRLSSLSKPVS 313
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 162 KLAKDVFQKVKQPIKVIELDERDDGNIIQDNLS 260
KL D K PI + L E N+IQDNLS
Sbjct: 635 KLRFDFSYKSSIPIDKLLLVENYCNNVIQDNLS 667
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,956
Number of Sequences: 5004
Number of extensions: 37646
Number of successful extensions: 127
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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