Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_M18
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 29 2.3
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981... 29 2.3
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 29 3.0
06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615... 29 4.0
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 28 5.3
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 5.3
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 28 7.0
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584... 28 7.0
>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 472 ERIELKTSLQLTQVKVTPSLCKTKFPFIY 386
E +E++ QLT+++V+ SLC +F +Y
Sbjct: 1152 EELEIRECSQLTKIEVSQSLCNLRFLKVY 1180
>01_03_0149 +
13194866-13195012,13196576-13196828,13197810-13198173,
13198283-13198501,13199888-13200002,13200697-13200948,
13201149-13201442
Length = 547
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 459 NSIRSLLMHLVYADHYVNKPSTEIVFRFYLELKPNINMLS 578
N I LL H VY+ Y +K + RFYL K NM S
Sbjct: 95 NEINELL-HFVYSSDYNDKDLNLVSLRFYLLRKNGYNMSS 133
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 330 QTAVAEAMLSDNRGDIISVYMKGNFVLHSEGVTFTCVSCSEVFNSIRSLLMHLVYADHY 506
Q + E L++++G + +Y + F + +EG C C++ + S L++H A Y
Sbjct: 224 QPSETELALAEHQGKTLFLYPELCFCIMNEGNAHACTVCTDEYQS-EFLILHSGVASGY 281
>06_02_0369 -
15260013-15260273,15260367-15260516,15261518-15261577,
15262114-15262241,15262559-15262654,15262655-15263039
Length = 359
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 99 DHVALPSFSSIYEHIESSTHIETVCKLIRSALYPSDIDEELVVLNKISTEPPKCNFCD 272
+ VA+ +I+EHI + I KL+R +P ++V + I P K +F D
Sbjct: 33 EKVAIKKIHNIFEHISDAARILREIKLLRLLRHP-----DIVEIKHIMLPPSKMDFRD 85
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/77 (29%), Positives = 30/77 (38%)
Frame = +3
Query: 258 CNFCDQTFQKIGDAFRHVLSSVEHQTAVAEAMLSDNRGDIISVYMKGNFVLHSEGVTFTC 437
C FC F F H S EH+ ++ + D NFV S+ C
Sbjct: 57 CLFCSARFDSESSLFSHCAS--EHRFDFYR-VVKETGMDFYGCIKLINFV-RSKVAENKC 112
Query: 438 VSCSEVFNSIRSLLMHL 488
SC +VF+S L HL
Sbjct: 113 WSCGQVFSSNSELCGHL 129
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +3
Query: 384 VYMKGNFVLHSEGVTFTCVSCSEVFNSIRSLLMHLVYADHYVNKPSTEIVFRFYLEL 554
+Y KG FVLHS+G F+ V ++V +++ SL ++ +KP+ + + + + L
Sbjct: 768 LYEKGAFVLHSDG-KFS-VDFTKVEDAVESLSREILTIQAKGDKPAAQSLLQSHASL 822
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 255 KCNFCDQTFQKIGDAFRHVLSSVEHQTAVAEAMLSDNRGDI 377
+C C++TF++ F H+ S ++Q EA L G +
Sbjct: 362 ECPVCNKTFEEQSRYFGHIGSHAKYQGLTPEAFLQTFSGKV 402
>05_02_0033 +
5847754-5847982,5848308-5848437,5849038-5849116,
5849194-5849251,5849732-5850795,5850899-5851003,
5851369-5851473
Length = 589
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 195 YPSDIDEELVVLNKISTEPPKCNFCDQTFQKIGDAFRHVLSSVE 326
Y +EE V+ ISTE C+ C Q F++IG H L ++
Sbjct: 327 YDPIFEEEYNVIGNISTETASCS-CGQ-FERIGILCAHALKVLD 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,321,520
Number of Sequences: 37544
Number of extensions: 364943
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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